PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.K80UC
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 334aa    MW: 36716.7 Da    PI: 4.8705
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.K80UCgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.82.8e-36251162102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++ ++lisw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k ll++i+
   Araip.K80UC  25 FLTKTYQLVDDPSADDLISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANECFRRGEKGLLRDIQ 112
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Araip.K80UC 113 RRKI 116
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.2E-3815108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.5E-5921114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.71E-3622114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.5E-212548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.6E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-216375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-217688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MTPLPVEQTG ESGATESQRS IPTPFLTKTY QLVDDPSADD LISWNEDGTT FIVWRPAEFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKVVP DRWEFANECF RRGEKGLLRD IQRRKISPAA  120
GDNNVVTVAM AAPGRVVSPT PTNSGDEQVL SSNSSPIAPP AAAQHNNNSK NTVHRTTSCT  180
SGPELLEENE RLRKENGQMK NELSQLRGLC NKILALMSNY ASRSSAQLLD SSASGVAAAV  240
VEGKVALELL PEKGVPCAVD TAEAEVPKLF GVSIGMKRSR TESEAEIERE DHNQTQTQRQ  300
TQSSQEPERG SDVKSEPLDG DGSDDQDPRW VELG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-272511720123Heat shock factor protein 1
5d5u_B5e-272511429129Heat shock factor protein 1
5d5v_B5e-272511429129Heat shock factor protein 1
5d5v_D5e-272511429129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.K80UC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016202087.10.0heat stress transcription factor B-2b isoform X2
RefseqXP_025653731.10.0heat stress transcription factor B-2b
SwissprotQ9T0D32e-96HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A444Z8P40.0A0A444Z8P4_ARAHY; Uncharacterized protein
STRINGGLYMA11G02800.11e-159(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.17e-82HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]