PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.K0K3F
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 354aa    MW: 39553.4 Da    PI: 4.4771
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.K0K3FgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.7e-11178222554
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  h ++Er+RR++i ++f  L  l+P +     kK++Ka++L   ++Y+k+L
  Araip.K0K3F 178 HIIAERKRREKISQSFIALAALVPGL-----KKMDKASVLGDSIKYVKEL 222
                  899***********************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.142173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-15178235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-8178222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.78E-11178227No hitNo description
Gene3DG3DSA:4.10.280.102.7E-16178236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-13179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEKSNTPMDT SAASWLSELE IDEDYNFFPD LDFDLVDEED FLSHELIASE DLQGKSALQD  60
QSLSAECNSK ELSNCCTDEM MSFEEMLRNI NDETFSPKLS SSSSQILSFD NSDSLSSSPP  120
NNTTQFYELK NSLNQRQDSV ETPNNNNNKK SDSLNTQNVE AKSTSTLGKR SPSHAHDHII  180
AERKRREKIS QSFIALAALV PGLKKMDKAS VLGDSIKYVK ELKERLAVLE EESKKTKALP  240
TVVLNKAEQL HAHGAAVFSS LCEEETIDGL PQVEAREWGQ QVLLRIHCWK EEGILVRILS  300
EIQSLQLMVL NSSVLSFGDS ILDITIIVQA GEGYNLTLNE LVKNLRMATL KLMS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13167237168Transcription factor MYC2
5gnj_B2e-13167237168Transcription factor MYC2
5gnj_E2e-13167237168Transcription factor MYC2
5gnj_F2e-13167237168Transcription factor MYC2
5gnj_G2e-13167237168Transcription factor MYC2
5gnj_I2e-13167237168Transcription factor MYC2
5gnj_M2e-13167237168Transcription factor MYC2
5gnj_N2e-13167237168Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181186ERKRRE
2182187RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.K0K3F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0990832e-50BT099083.1 Soybean clone JCVI-FLGm-26F18 unknown mRNA.
GenBankKT0311252e-50KT031125.1 Glycine max clone HN_CCL_79 bHLH transcription factor (Glyma17g16720.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016174778.10.0transcription factor bHLH19 isoform X2
RefseqXP_025631009.10.0transcription factor bHLH19
TrEMBLA0A445ARG70.0A0A445ARG7_ARAHY; Uncharacterized protein
STRINGGLYMA05G23530.11e-104(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110691238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-50bHLH family protein