PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.JXV3W
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CO-like
Protein Properties Length: 434aa    MW: 48524 Da    PI: 5.4947
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.JXV3WgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.17.4e-082366340
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 +r C+ + + ++++fC  ++ +lC+ C    H+       H++v
  Araip.JXV3W 23 ARACDSCLRRRARWFCAADDAFLCHACDNLVHSAnqlasrHERV 66
                 578*****************************657788888876 PP
2CCT66.76.5e-23376419144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  Araip.JXV3W 376 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRS 419
                  9****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.6082168IPR000315B-box-type zinc finger
SMARTSM003366.2E-102168IPR000315B-box-type zinc finger
PfamPF006431.3E-62366IPR000315B-box-type zinc finger
CDDcd000215.03E-82468No hitNo description
PfamPF062039.9E-18376418IPR010402CCT domain
PROSITE profilePS5101715.993376418IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MSTGMKDAAA TATSASALGA KTARACDSCL RRRARWFCAA DDAFLCHACD NLVHSANQLA  60
SRHERVRLQT ASCKLTNKVT TAHAWHSGFT RKARTPRHNN NKHLALQQRL KDQVLFNTAC  120
VLPVVPELGV EETALLDDHE SEEQLLCRVP VFDPFDAELC NDVYSEVRDE KNHEERGCCD  180
DLESFSEFLP SDMDLAEFAA DVENLLGSGI DEDSLGIDCK EEVQREDACV RAETTINIKE  240
GAMVMVKVKD EELDSDTASH LQSVFDITND DEFDWNIESV LLSTEEKATA AAPVSNNSDS  300
VSEEKKRDIF LRLNYEEVIN AWASQGSPWT TGTPPPFNPH DHSWPNFLDP SGGDVHQCSS  360
YGDGRSVRGH VGDGGREARV SRYREKRRTR LFAKKIRYEV RKLNAEKRPR MKGRFVKRSC  420
LVGGATTSFQ TSYN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1386402RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.JXV3W
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016188907.10.0zinc finger protein CONSTANS-LIKE 16
RefseqXP_025644245.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A445A2P30.0A0A445A2P3_ARAHY; Uncharacterized protein
STRINGAET053251e-153(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.14e-94B-box type zinc finger protein with CCT domain