PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.JE9KX
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 567aa    MW: 63085 Da    PI: 4.6877
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.JE9KXgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.33.2e-14363409455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Araip.JE9KX 363 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 409
                  7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.625359408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-20361432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.61E-15363413No hitNo description
Gene3DG3DSA:4.10.280.101.6E-19363428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-12363408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-17365414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MPCKSQTVVC IPLLDGVVEF GTIDKHSTSN PASSSDCLIY TVADPPLHLT HQEDIKFIQH  60
VKSFFIEHHH ASVHPPPPPP KPALSEHSTS NPASSSDCLI YTVADPPLPP PNLTHEDNME  120
EDQDNEEEEE EEEDEDDEEE EPILDSEDEK RRNNNNVSGG ITEPSELMQL EMSEDIRVGS  180
PNDGSNNLDS NFHLLAVTEA DNHSGQVDSY RVDPTQRWDP IQSPLDQLQV QLPVFSPIED  240
QILTQEDDHY SQTVSSILQN QSTRWAESPS IACYVTCSNQ SAFAKWTSLV ADEHLHAATA  300
DGSSQWLLKY ILFTVPYLHS NKNNEENNSS PNNTNPTSSA GPTDRLRGGG KGSGTPQDEL  360
SANHVLAERR RREKLNERFI ILRSLVPFVT KMDKASILGD TIEYVKQLRR KIQDLEARIR  420
QMEAEQQRSR TPSTTIEVHH CGSSNKEQQQ HTVVLGHEKR KVRIVEGTKT ATKVAAAAAT  480
EASVQVSIIE SDALLELECS HREGLLLDVM LVLREMKIEV IGVQSSLNNG VFVAELRAKV  540
KDNNCGKKVS IVEVKRALNQ VIPHTGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14363412857Transcription factor MYC2
5gnj_B2e-14363412857Transcription factor MYC2
5gnj_E2e-14363412857Transcription factor MYC2
5gnj_F2e-14363412857Transcription factor MYC2
5gnj_G2e-14363412857Transcription factor MYC2
5gnj_I2e-14363412857Transcription factor MYC2
5gnj_M2e-14363412857Transcription factor MYC2
5gnj_N2e-14363412857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1367372ERRRRE
2368373RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.JE9KX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025634325.10.0basic helix-loop-helix protein A isoform X1
RefseqXP_025634326.10.0basic helix-loop-helix protein A isoform X1
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A445E6050.0A0A445E605_ARAHY; Uncharacterized protein
STRINGGLYMA02G16670.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.14e-56bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]