PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.J4WHX
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 317aa    MW: 36469.7 Da    PI: 8.3113
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.J4WHXgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00044174198123
                  EEETTTTEEESSHHHHHHHHHH..T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                  + C+ C+k ++  ++++ H+++  H
  Araip.J4WHX 174 FYCELCNKQYKLAMEFEAHLSSydH 198
                  79*****************987555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004437.7E-1877122IPR000467G-patch domain
PROSITE profilePS5017416.73379124IPR000467G-patch domain
PfamPF015851.9E-1580120IPR000467G-patch domain
SuperFamilySSF576673.5E-5155209No hitNo description
PfamPF121716.9E-6174201IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280176198IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MFVSCDFAAT CIMDYRWTNG RQDTGSGRDR RQHKRDQAYQ DSSVENSLED FRLPINHRPT  60
ENVDLENVEQ ASLDTQLTSS NIGFKLLQKM GWKGKGLGKD EQGIIEPIKS GMRDPRLGVG  120
KQEEDDFFTA EENIQRRKLD IELEETEENV RKREVLAERE QKIQTEVKEI RKVFYCELCN  180
KQYKLAMEFE AHLSSYDHNH RKRFKQMKEM HGGSSRDDRQ KREQQRQEKE MAKFAQMADA  240
QKQQRLQLQQ ESGSASASSG SKTATALTDQ EQRNTLKFGF SSKGTASKVS VGIKKPNIAK  300
KKNVPISSIF GNDSDEE
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.J4WHX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016205641.10.0G patch domain-containing protein 8
RefseqXP_020959620.10.0G patch domain-containing protein 8
RefseqXP_025662304.10.0G patch domain-containing protein 8
RefseqXP_025662305.10.0G patch domain-containing protein 8
TrEMBLA0A444YJC60.0A0A444YJC6_ARAHY; Uncharacterized protein
STRINGXP_007163288.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59772428