PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.J006E
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRF
Protein Properties Length: 347aa    MW: 37886.2 Da    PI: 8.1608
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.J006EgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC696.1e-2270114145
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                  d+epgrCrRtDGKkWRCsr++ +++k+C+rH+ r r rsrk++e+
  Araip.J006E  70 DPEPGRCRRTDGKKWRCSREAHPDSKYCDRHMIRRRYRSRKPVES 114
                  79****************************************997 PP
2QLQ33.81e-128351037
          QLQ 10 lLksQilAyKyLaanqPvPpeLlqaiqk 37
                 +L++Q+l++KyL a++ vPp+Ll++i++
  Araip.J006E  8 ELEHQALIFKYLKAGLTVPPDLLVPIRR 35
                 9*************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5166614.013135IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.1E-8834IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.69870114IPR014977WRC domain
PfamPF088797.4E-1971113IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MAELVYSELE HQALIFKYLK AGLTVPPDLL VPIRRSLQLI LKFQSLISFC VCLLCVCVYA  60
SVGFYGKKID PEPGRCRRTD GKKWRCSREA HPDSKYCDRH MIRRRYRSRK PVESSTSSQQ  120
QSHSSAAASA ATAASTTTTT TTTTTTASAA SGGGGGGGAS GSGGAFHTLP LHTNGTREGF  180
TLGSSNSSSL QNLHMDHPLS LPSEVSKKEY RFALNSDVDE HNFLQKDLGT VRYQGYDFTS  240
DGLWSMPHIP SNTVSESRTG STMVGDCFQQ QTIRDADLLN LNASGSKELV FGSQLSPSSS  300
GSLKQEYQSP QSLFTDWHWK KDLGSDAIYR PHKDFNSDAN VDCNGSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.J006E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016201216.10.0growth-regulating factor 3
TrEMBLA0A444WVK81e-177A0A444WVK8_ARAHY; Uncharacterized protein
STRINGGLYMA01G35145.11e-138(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149481112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-33growth-regulating factor 5