PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.IY510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 247aa MW: 26666.7 Da PI: 8.2376 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 28.7 | 3.1e-09 | 68 | 86 | 40 | 58 |
ZF-HD_dimer 40 alkCaACgCHRnFHRreve 58 a+ CaAC+CHRnFHR+e + Araip.IY510 68 AVICAACNCHRNFHRKEID 86 778*************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 3.0E-6 | 58 | 87 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 7.9E-6 | 68 | 85 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.14E-20 | 171 | 245 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.8E-31 | 174 | 246 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.2E-24 | 184 | 241 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MEFDEQEEQE EELGIPEAPQ PQATQACYDS LGNSAKLTGD GTAASGFGRK GAAASSVRYR 60 ECQKNHAAVI CAACNCHRNF HRKEIDGDIR GGSGAGTLHH HRPQPPPPHL HQFSPYYHHR 120 GPPYPAGYLH HLATPPMAQH RPLALPAAVS GGGLSRDEED MSNPSSSGGG GGGGGGGCGS 180 GSSKKRFRTK FTQEQKDKML AFAEQVGWRI QKQDEAMVEQ FCAEACVKRS VLKVWMHNNK 240 NTLGKKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-26 | 183 | 242 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.IY510 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025666972.1 | 1e-138 | zinc-finger homeodomain protein 2 isoform X2 | ||||
Swissprot | A2Z259 | 1e-48 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A445CGD6 | 1e-136 | A0A445CGD6_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA14G35770.1 | 3e-87 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 7e-43 | homeobox protein 22 |