PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.IW5LR | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | CAMTA | ||||||||
Protein Properties | Length: 228aa MW: 26644.5 Da PI: 7.6871 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 29.8 | 1.1e-09 | 41 | 78 | 73 | 118 |
CG-1 73 LKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 L g+v+vl+cyYah+e+n++fqr ++ e+ivlvhy+++k Araip.IW5LR 41 LWAGNVDVLNCYYAHGEDNENFQR-------KS-EHIVLVHYRDTK 78 56799*******************.......34.7*******9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03859 | 1.4E-6 | 41 | 76 | IPR005559 | CG-1 DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MLRIVCKNIA VMSPECSTSM GVATLATLIS IRNGIIVTIA LWAGNVDVLN CYYAHGEDNE 60 NFQRKSEHIV LVHYRDTKEQ WSRWQRRKPD ADTVFLKAMA EIGQVKLYGE HPTLIEMSLY 120 RARRHLYKEE RLQAEEDKLE EIGPMAYYSE WVKAWKGDTS REAIQKHFKE TGEDETAQLI 180 EMFSHQTDRE YRIMIGTDVH IKRDPLAMRM KEKQIKKSQG QASHTLWL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in plastid gene expression (PubMed:16326926). Required in the nucleus for the initiation of photomorphogenesis mediated by phytochromes (PHYs) (e.g. PHYA and PHYB) by mediating PHYs localization to photobodies, especially in response to red and far-red light, and implicating phytochrome nuclear bodies as sites of proteolysis for PHYs and PIFs proteins (e.g. PIF1 and PIF3). Acts downstream of PHYs and upstream of DET1 (PubMed:20603003, PubMed:22895253). {ECO:0000269|PubMed:16326926, ECO:0000269|PubMed:20603003, ECO:0000269|PubMed:22895253}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.IW5LR |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by light at the post-translational level; constitutively expressed at transcript level, but accumulates in response to light (e.g. red, far red, blue and white light) at protein level. {ECO:0000269|PubMed:20603003, ECO:0000269|PubMed:22895253}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020971693.1 | 1e-110 | protein PLASTID TRANSCRIPTIONALLY ACTIVE 12-like | ||||
Swissprot | F4IHY7 | 7e-78 | PTA12_ARATH; Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic | ||||
TrEMBL | A0A444WWP9 | 1e-87 | A0A444WWP9_ARAHY; Uncharacterized protein | ||||
STRING | PGSC0003DMT400054354 | 5e-79 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22300.2 | 1e-11 | signal responsive 1 |