PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.IS14J | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 211aa MW: 24127.7 Da PI: 10.1654 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.7 | 4.6e-06 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Araip.IS14J 83 FVCEICNKGFQRDQNLQLHRRGH 105 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.0003 | 159 | 181 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Araip.IS14J 159 WKCDKCSKIYAVQSDWKAHSKTC 181 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.4E-6 | 82 | 105 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.47E-7 | 82 | 105 | No hit | No description |
SMART | SM00355 | 0.017 | 83 | 105 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 2.6E-5 | 83 | 105 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.949 | 83 | 105 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 85 | 105 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 170 | 124 | 154 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.1E-4 | 147 | 180 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.47E-7 | 154 | 179 | No hit | No description |
SMART | SM00355 | 180 | 159 | 179 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MFPAVMSNST SLSEEASVSS GTRIQDFGAT LNHVVSTISP HQQQQQQQPP QKIKKKRSLP 60 GNPDPDAEVI ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRNNKEVK 120 KRAYVCPEPS CVHHNPSRAL GDLTGIKKHY CRKHGEKKWK CDKCSKIYAV QSDWKAHSKT 180 CGTREYRCDC GTLFSRYLFI IFTYANLILM N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 7e-22 | 155 | 196 | 3 | 44 | Zinc finger protein JACKDAW |
5b3h_F | 7e-22 | 155 | 196 | 3 | 44 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.IS14J |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016182885.1 | 1e-145 | protein indeterminate-domain 12 | ||||
Refseq | XP_025632297.1 | 1e-145 | protein indeterminate-domain 12 | ||||
Swissprot | Q8H1F5 | 5e-98 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | A0A061DRD1 | 1e-125 | A0A061DRD1_THECC; Indeterminate(ID)-domain 12 | ||||
STRING | EOX94636 | 1e-126 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 4e-97 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
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