PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.IQ0PD
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 529aa    MW: 57244.6 Da    PI: 8.8637
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.IQ0PDgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-05102124123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C++C+k F r  nL+ H r H
  Araip.IQ0PD 102 FICEICNKGFQRDQNLQLHRRGH 124
                  89*******************88 PP
2zf-C2H211.10.0012178200123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H + +
  Araip.IQ0PD 178 WKCDKCSKKYAVQSDWKAHSKIC 200
                  58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.63E-6101124No hitNo description
Gene3DG3DSA:3.30.160.601.4E-5101124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.845102124IPR007087Zinc finger, C2H2
PfamPF121716.4E-5102124IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.022102124IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
SMARTSM00355240143173IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.8E-4166199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.63E-6173198No hitNo description
SMARTSM00355150178198IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MSNITSCDSG SFSTENTVPL LEDAVVKQQS SEILGGRFHH SPHSHTSTTT TNNKNNNSNA  60
SNSNSQPPPP PPKKKRNLPG NPDPSAEVIA LSPTTLMATN RFICEICNKG FQRDQNLQLH  120
RRGHNLPWKL KQRTSTEVRK RVYVCPESSC VHHNPARALG DLTGIKKHFC RKHGEKKWKC  180
DKCSKKYAVQ SDWKAHSKIC GTREYKCDCG TIFSRRDSFI THRAFCDALA EENNNKNEGS  240
LFPNIPSNLQ SQPQIPNLLL PSLPITTTPT TLSSSSSLPL HHDLIIPKPS FNNIPFPRNP  300
NTTSTTTIFD DNALHLTASS SSLSSPHMSA TALLQKAAQM GATVSSSNNN IVVENSNKGG  360
GYVTATTSMA PPSFSGVAPV QQNVNNNNNS LFMNQFMQQD MATTPHHYGN LMCGMNGVDM  420
FNAILDQSKA LSKIIDHSNH HRESAVTKRE CTKGGSIGGN SDVMTLDLLG IGGGGGGGHN  480
GSGGFYGGGN NNNNQQQGDN NGAASVRDEV WNWSTKNAGF ESFSATSSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-32174232361Zinc finger protein JACKDAW
5b3h_F2e-32174232361Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.IQ0PD
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016176262.10.0protein indeterminate-domain 2
RefseqXP_025676102.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1
SwissprotQ9ZWA61e-114IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A444XL500.0A0A444XL50_ARAHY; Uncharacterized protein
STRINGGLYMA20G37900.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.16e-98C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]