PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.IM4L6
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 365aa    MW: 42356.5 Da    PI: 9.7159
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.IM4L6genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.15.8e-181296290
         FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                 fY +YAk+vGFs  ++++k + +n++it + +vCsk g+++++ +     ++t+ +++ +Ck ++ vkk+k+ ++++t ++++HnH ++
  Araip.IM4L6 12 FYTNYAKRVGFSWNIRTTKWN-QNRQITYQILVCSKAGYQRSKIDP---LKKTNLTSEQNCKVRIIVKKDKKLEYVLTFVNNQHNHVIS 96
                 9**************998887.6777**************998776...9999*********************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-151296IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.396297333IPR007527Zinc finger, SWIM-type
SMARTSM005750.0022308335IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MTFPSVKDYE TFYTNYAKRV GFSWNIRTTK WNQNRQITYQ ILVCSKAGYQ RSKIDPLKKT  60
NLTSEQNCKV RIIVKKDKKL EYVLTFVNNQ HNHVISPSMA NTLRKNRELS LHAKWIAEIN  120
DQAGVTMRNR YQSLATTAGG YDKLTFNEKD LRNHVAKSLY EERDKWVLIF LSNSFWVGMS  180
STQRSESMHS FMKGYLTSKS NLQQFVTQHD NCLVNKAQKE YELDAASFNT IIPCATASAI  240
EKLFQKEYSH AKFNELQKEF RAKANCFSTK EHEQGYIVTY KVIEEIENGD KMFDSMYEVL  300
FDSSTSDVSC QCHLFESKGI LCCHTLSVLG LVRVKKLPNK YILDRWKKTL KHKHIASSVA  360
MIQAV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.IM4L6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016185480.11e-148protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025635859.11e-148protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445AGC70.0A0A445AGC7_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.22e-32far-red elongated hypocotyls 3