PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.IM0DR

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 489aa MW: 56286.1 Da PI: 8.0714

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.IM0DR	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24.3	1e-07	159	205	1	47
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 +fY +YA++vGF+ +++++ k+ ++ +++ +C++ g+r++++ Araip.IM0DR 159 QFYYNYANKVGFEPHIRNTNFDKNGKTPINQSIQCNRDGYRTKKNPI 205 6****************************************998654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.5E-5	159	205	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MPLEKWKEVQ TSSPTEAAEK KNQGKRIERS REGLENVQDP AHPQTPPAEP EVSSAKNPRT 60 ESPKIDVSPS FRAEALPRSA LLKDINMAFA IDLNTQSSSE EIHSFDTHID MDDINICNSS 120 SNSAIETECT TEVIIYPTIY DEEIPKVGML FGTIEEARQF YYNYANKVGF EPHIRNTNFD 180 KNGKTPINQS IQCNRDGYRT KKNPIPSNVE LAHTHRCDPI LSWMFKKNRE LTMHVKDVIE 240 RNDQADKEQQ ELECDAADNR GLIPCVSNSP IEKQFQYEYT NNIFRNVQAE FIKKCDCNLS 300 PRAVKDNQYF YEVTQQKIIK GMSFYSEYEV VFCPISHQVR VDKVNSSYIL SRWSKNVYRK 360 HTHIRSSHDS RRSNESMNIF RGLCVDFYNV AQDFVHDKEE ADILRSAFAS AKVALTEHRA 420 KHSESGRPSF KRLEADVDRK IKNGTKKRRA SSKHTKEVAA VEGDKHLNKA TERRITASKH 480 PKIYFSVYC

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MPLEKWKEVQ TSSPTEAAEK KNQGKRIERS REGLENVQDP AHPQTPPAEP EVSSAKNPRT  60
ESPKIDVSPS FRAEALPRSA LLKDINMAFA IDLNTQSSSE EIHSFDTHID MDDINICNSS  120
SNSAIETECT TEVIIYPTIY DEEIPKVGML FGTIEEARQF YYNYANKVGF EPHIRNTNFD  180
KNGKTPINQS IQCNRDGYRT KKNPIPSNVE LAHTHRCDPI LSWMFKKNRE LTMHVKDVIE  240
RNDQADKEQQ ELECDAADNR GLIPCVSNSP IEKQFQYEYT NNIFRNVQAE FIKKCDCNLS  300
PRAVKDNQYF YEVTQQKIIK GMSFYSEYEV VFCPISHQVR VDKVNSSYIL SRWSKNVYRK  360
HTHIRSSHDS RRSNESMNIF RGLCVDFYNV AQDFVHDKEE ADILRSAFAS AKVALTEHRA  420
KHSESGRPSF KRLEADVDRK IKNGTKKRRA SSKHTKEVAA VEGDKHLNKA TERRITASKH  480
PKIYFSVYC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.IM0DR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025679216.1	1e-148	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444XWU1	0.0	A0A444XWU1_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF23517	2	3