PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.IK2R0
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CO-like
Protein Properties Length: 432aa    MW: 48501.9 Da    PI: 6.4653
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.IK2R0genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.85.4e-091758338
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                 +r C+ +  k+++++C  ++ +lC+ C ++ H+       H+
  Araip.IK2R0 17 ARACDSCITKRARWYCAADDAFLCQACDSSVHSAnplarrHQ 58
                 578*****************************6567777776 PP
2CCT682.5e-23379422144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Araip.IK2R0 379 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 422
                  9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.7931562IPR000315B-box-type zinc finger
SMARTSM003363.0E-101562IPR000315B-box-type zinc finger
PfamPF006431.6E-71759IPR000315B-box-type zinc finger
CDDcd000211.24E-81862No hitNo description
PROSITE profilePS5101716.083379421IPR010402CCT domain
PfamPF062037.3E-18379421IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MSPSSKNVAN AVGGKTARAC DSCITKRARW YCAADDAFLC QACDSSVHSA NPLARRHQRL  60
RLKTATLDPL NTTSTCAPTW HHGFTKKART PRNGGKTNHS SSSTRPTSKS CWSSRNNNQQ  120
PFHLVPEEGE GSDEVNSHED NEEQLLYRVP VFDPFVAELC SPAENNNKKE SEESKGSFGS  180
HLHGFLPSEA DLAEFAADVE SLLGRGMENE CVGMEHLGLI DNNNNNNKVV KVEMEQEQEH  240
MDATCSSCKL EEGDNHMMMM EIGRETAFQF SFDYDESHET EEIDKEKVKE KEDDDDDDED  300
AINKKRKILL QLDYEGVINA WGGSHKSPWT TGHKPNLDLH DCWPHTMATG GTELHHGYGE  360
LMIGLGCNPS SVILGDGGRE ARVSRYREKR RTRLFSKKIR YEVRKLNAEK RPRMKGRFVK  420
RASFAAPFPL IA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1389405RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.IK2R0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150413e-47AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016177253.10.0zinc finger protein CONSTANS-LIKE 16
RefseqXP_025679610.10.0zinc finger protein CONSTANS-LIKE 16
SwissprotQ8RWD01e-106COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A444XUW00.0A0A444XUW0_ARAHY; Uncharacterized protein
STRINGXP_004497095.11e-161(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-103B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]