PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.I3G54

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

G2-like

Protein Properties

Length: 97aa MW: 10913.5 Da PI: 10.8637

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.I3G54	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.1	1.3e-30	45	96	2	53
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 prlrWtp+LH rF++av++LGG+e+AtPk +l+lm++kgL+++hvkSHLQ Y Araip.I3G54 45 PRLRWTPDLHLRFIHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQVY 96 8*************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.4E-27	41	96	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.129	41	97	IPR017930	Myb domain
SuperFamily	SSF46689	3.4E-14	43	96	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.1E-22	45	96	IPR006447	Myb domain, plants
Pfam	PF00249	3.7E-10	46	96	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 97 aa Download sequence Send to blast
MDQNKQYKNN NGGGGGCSSN STVEENNEKK SSSTSVRPYV RSKLPRLRWT PDLHLRFIHA 60 VQRLGGQERA TPKLVLQLMN IKGLSIAHVK SHLQVYI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-19	46	96	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-19	46	96	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-19	46	96	3	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-19	46	96	3	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-19	46	96	3	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-19	46	96	3	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-19	46	96	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-19	46	96	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-19	46	96	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-19	46	96	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-19	46	96	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-19	46	96	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.I3G54

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016198754.1	3e-60	transcription factor LUX isoform X1
Refseq	XP_016198755.1	2e-60	transcription factor LUX isoform X2
Refseq	XP_025648768.1	3e-60	transcription factor LUX isoform X1
Refseq	XP_025648769.1	2e-60	transcription factor LUX isoform X2
Swissprot	Q700D9	1e-27	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A1S2XPD4	1e-45	A0A1S2XPD4_CICAR; putative Myb family transcription factor At1g14600 isoform X2
TrEMBL	A0A1S2XQP0	2e-45	A0A1S2XQP0_CICAR; putative Myb family transcription factor At1g14600 isoform X1
STRING	XP_004492477.1	3e-46	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2378	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-34	G2-like family protein