PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.I17XL | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | TALE | ||||||||
Protein Properties | Length: 258aa MW: 30361.4 Da PI: 9.906 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29 | 1.8e-09 | 184 | 219 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ LA+++gL+++q+ +WF N+R ++ Araip.I17XL 184 YKWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 219 4679*****************************885 PP | |||||||
2 | ELK | 38.5 | 2.4e-13 | 139 | 160 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrKYsgyL+sLkqE+s Araip.I17XL 139 ELKNHLLRKYSGYLSSLKQELS 160 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01256 | 4.8E-11 | 90 | 129 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.2E-7 | 105 | 128 | IPR005541 | KNOX2 |
SMART | SM01188 | 3.5E-7 | 139 | 160 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.6E-10 | 139 | 160 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.296 | 139 | 159 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.119 | 159 | 222 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-20 | 160 | 234 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.8E-13 | 161 | 226 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-28 | 164 | 225 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.03E-11 | 171 | 223 | No hit | No description |
Pfam | PF05920 | 6.3E-17 | 179 | 218 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 197 | 220 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001708 | Biological Process | cell fate specification | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
LVVKTEAIST TPHHHLQTPI LHHYPLLRGN NNNMHHPHHS QQHHHHQQGG NYNQSSNNGV 60 GEVGAPPEVV ARLVAARQEF EARQRSSVSS RESYNKDPEL DQFMELTRPI QEAMDFMRRI 120 ETQLNMLCNG PVRIFQDREL KNHLLRKYSG YLSSLKQELS KKKKKGKLPK EARQKLLNWW 180 ELHYKWPYPS ESEKVALAES TGLDQKQINN WFINQRKRHW KPSEDMQFMV MDGLHAHQKA 240 TLYMDPHYLP DPHYRLAP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably binds to the DNA sequence 5'-TGAC-3'. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.I17XL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025660155.1 | 1e-151 | homeotic protein knotted-1 isoform X1 | ||||
Refseq | XP_025660156.1 | 1e-151 | homeotic protein knotted-1 isoform X2 | ||||
Swissprot | O04135 | 1e-100 | KNAP2_MALDO; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | A0A445CXC5 | 1e-150 | A0A445CXC5_ARAHY; Uncharacterized protein | ||||
STRING | XP_004498934.1 | 1e-115 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4584 | 32 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 2e-82 | KNOTTED-like from Arabidopsis thaliana |