PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.HB8ML
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 512aa    MW: 57236.1 Da    PI: 9.4978
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.HB8MLgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.2e-065779123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C++C++ F r  nL+ H r+H
  Araip.HB8ML 57 YVCEICNQGFQRDQNLQMHRRRH 79
                 9*********************9 PP
2zf-C2H214.30.00012134156123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ C+k +  +s++k H++t+
  Araip.HB8ML 134 WVCERCSKGYAVQSDYKAHLKTC 156
                  58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.79E-55480No hitNo description
Gene3DG3DSA:3.30.160.602.1E-55679IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.975779IPR007087Zinc finger, C2H2
PfamPF128740.0265775No hitNo description
SMARTSM003550.00525779IPR015880Zinc finger, C2H2-like
PROSITE patternPS01359059139IPR019786Zinc finger, PHD-type, conserved site
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SMARTSM0035519098128IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.8E-4125155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355100134161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MLANNSSVAP SSEPFSCADN NNGTPSNKRK RRPAGTPDPD AEVVSLSPKT LLESDRYVCE  60
ICNQGFQRDQ NLQMHRRRHK VPWKLLKRET PVVRKRVFVC PEPTCLHHDP CHALGDLVGI  120
KKHFRRKHSN HKQWVCERCS KGYAVQSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD  180
ACNMGRLRTE SHHNHNHNHQ QPPTPTACLS RTASSPSPSR SETNFSTAPW QPTSSTTTTT  240
PTSLVVIAKP ITTTTEPPFF NNTNPTPILA TAETFLFKKS NTSNKLLHPN LDLQLSTTTT  300
TTMMMNNNNS IPNVDLTLSP KSDNNHHQQL QNQQHSTQLQ LSIGGTTSSD ISENNNKNDS  360
SNRNSSPKES INSSNENKHA TATSMALRVQ EQAREQLRLA MAEKAYAEEA RKQAKRQIEM  420
AEQEFNNAKR IRQQAQAELD KACALKEHAM KKINSTIMQI TCHSCKQHFH LQPPPVSATA  480
PPDENSLVLS YMSSGITTEE SAMNKGRQGG RK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-18130183356Zinc finger protein JACKDAW
5b3h_F4e-18130183356Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.HB8ML
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016203360.10.0protein SHOOT GRAVITROPISM 5
RefseqXP_025655543.10.0zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A444Z1L10.0A0A444Z1L1_ARAHY; Uncharacterized protein
STRINGGLYMA09G30030.10.0(Glycine max)
STRINGXP_007152626.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17693289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-111C2H2-like zinc finger protein