PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.H9ZRK
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Trihelix
Protein Properties Length: 600aa    MW: 66517 Da    PI: 6.2936
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.H9ZRKgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.52.4e-3060144187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW++qe+laL+++r++me ++r+++ k+plWe+vs+km+e g++rs+k+Ckek+en+ k++k++keg+ +++  + +t+++fdqlea
  Araip.H9ZRK  60 RWPRQETLALLRIRSDMEAAFREASVKGPLWEQVSRKMAELGYQRSSKKCKEKFENVYKYHKRTKEGRTGKS--DGKTYRFFDQLEA 144
                  8********************************************************************964..5557*******85 PP
2trihelix105.24.7e-33423508187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW+k ev aLi++r++m+ +++++  k+plWee+s+ m++ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  Araip.H9ZRK 423 RWPKVEVEALIRLRTSMDAKYQENGPKGPLWEEISSSMKKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 508
                  8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.1157119IPR001005SANT/Myb domain
CDDcd122037.06E-2459124No hitNo description
PfamPF138376.3E-2059145No hitNo description
PROSITE profilePS500906.6959117IPR017877Myb-like domain
PRINTSPR012172.0E-9151163No hitNo description
PRINTSPR012172.0E-9165181No hitNo description
SuperFamilySSF1014471.62E-6168176No hitNo description
PRINTSPR012172.0E-9195216No hitNo description
PRINTSPR012172.0E-9344369No hitNo description
SMARTSM007173.0E-4420482IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-4422479IPR009057Homeodomain-like
PROSITE profilePS500907.259422480IPR017877Myb-like domain
PfamPF138372.1E-22422509No hitNo description
CDDcd122031.57E-27422487No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MLGDSALLGG GGSSGGASDD AVAAAAVAAS GGGGGGSNNS GDDERGRNIE EGGSSFGGNR  60
WPRQETLALL RIRSDMEAAF REASVKGPLW EQVSRKMAEL GYQRSSKKCK EKFENVYKYH  120
KRTKEGRTGK SDGKTYRFFD QLEALENQSQ TTLVHHQSPK PTPMPPPPPP PPPPPPPPPT  180
TTTHVTVPST TIIPSYQTPP PPQPTNPTTL LFPSSSTTTI PTDLLSNSTS SSTSSDESME  240
GRRRRKRKWK DFFHRLMTEV IEKQEDLQKR FLEAVEKRER DRMAREESWR LQEMQRINRE  300
REILAQERSI AAAKDAAVMS FLQKIAEQHN LGQALNNTIS IVQPQPQPQP QPQSQPNAPQ  360
IPPSPVQQPT PVTQVAVAPV AAQPVAPSAP TVPQQQQVVT SMEIVKSADN NNGEKSIGGS  420
SSRWPKVEVE ALIRLRTSMD AKYQENGPKG PLWEEISSSM KKLGYNRNAK RCKEKWENIN  480
KYFKKVKESN KKRPEDSKTC PYFHQLDALY REKNKLDMAP KPQSMVAPLM VRPEQQWPPQ  540
AMEDAENDPM ERHHDEDDED EEQEKETGDE EDEEDEGGGN GNGGNNYEIV GSKAATASAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241247RRRRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.H9ZRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025679704.10.0trihelix transcription factor GT-2 isoform X1
SwissprotQ391171e-145TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A444XTK20.0A0A444XTK2_ARAHY; Uncharacterized protein
STRINGAES623650.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-59Trihelix family protein