PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.H8Z88
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 615aa    MW: 69413 Da    PI: 7.5663
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.H8Z88genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3794.8e-25169269198
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+l++sd++++g +++ +k+a+e+       ++++++  +l+ +d +g +W++k+iyr++++r++lt+GW+ Fv a++L +gD++vF   + ++++
  Araip.H8Z88 169 FCKTLSTSDTSTHGGFSVLRKHANEClpqldmtMENPTQ--ELVAKDIHGVEWKFKHIYRGHPKRHLLTTGWSAFVAAKKLVVGDSFVFL--RGENGQ 262
                  99****************************987555544..8************************************************..448999 PP

                  .EEEEE- CS
           B3  92 lvvkvfr 98 
                  l+v+++r
  Araip.H8Z88 263 LRVGIRR 269
                  9****98 PP
2Auxin_resp89.75.4e-30295374183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+h++ t+++F v+Y+Pr+  s+F+v+++k+ +++++ + +GmRfkm+ e+ed   +r+ Gt+vgv d ++ +WpnS+WrsLk
  Araip.H8Z88 295 ASHSVMTSTMFVVYYKPRT--SQFIVSLNKYIDTMNNDFKIGMRFKMRHEGEDPLDKRFCGTIVGVGD-ESREWPNSQWRSLK 374
                  679999************6..9**********************************************.888*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.97E-38157296IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-39161283IPR015300DNA-binding pseudobarrel domain
CDDcd100175.93E-22168269No hitNo description
SMARTSM010191.3E-23169271IPR003340B3 DNA binding domain
PfamPF023621.7E-22169269IPR003340B3 DNA binding domain
PROSITE profilePS5086312.167169271IPR003340B3 DNA binding domain
PfamPF065071.9E-28295374IPR010525Auxin response factor
SuperFamilySSF542774.71E-8542614No hitNo description
PfamPF023096.8E-7545585IPR033389AUX/IAA domain
PROSITE profilePS5174521.799548615IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
LQTNKQRKKK KKKKKNTHIK QNNSQSSVTE REEEARENTK EHIIIHSHLT IIMADGAGDD  60
LFKELWRLCA GPLMDVPCVQ DRVFYFPQGH IELLPEPTEQ ELRQMKNQKS PKYDLPSKIL  120
CRVIDVKCLA EMETDEVYAR ITLQPSSDND PLDPNPICSE KPKQKFYSFC KTLSTSDTST  180
HGGFSVLRKH ANECLPQLDM TMENPTQELV AKDIHGVEWK FKHIYRGHPK RHLLTTGWSA  240
FVAAKKLVVG DSFVFLRGEN GQLRVGIRRL NPPQSPTPSS VVSTQNMRLG VIVTASHSVM  300
TSTMFVVYYK PRTSQFIVSL NKYIDTMNND FKIGMRFKMR HEGEDPLDKR FCGTIVGVGD  360
ESREWPNSQW RSLKVQWDEP ATMQRPDRVS CWEIEPLVTS PLNTIQPMAK GKRSRHAEAS  420
SSAASGSKES QVATIWHPPH LNGNGNSSQD LKNNKAVVPA GPAGEGPACD HNEDGKKGMD  480
CWLFGVNLTS SYSNVVTPLE KELWCEASTI LHCGPKESII VGACETEKVQ SLNNHSLSNK  540
QGHVPSMRTR TKVKMEGVAV GRAIDLTTLN GYDELIVELE KMFDIEGEII SQKKWAVTFT  600
DEENDLMLLD DDLWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1385939717355Auxin response factor 1
4ldw_A1e-1385939717355Auxin response factor 1
4ldw_B1e-1385939717355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1512QRKKKKKK
2614RKKKKKKKK
3814KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.H8Z88
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016206361.10.0auxin response factor 18-like
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLA0A444YMF70.0A0A444YMF7_ARAHY; Auxin response factor
STRINGGLYMA16G02650.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2363723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61830.11e-173auxin response factor 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]