PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.H7YL9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 182aa MW: 20536.2 Da PI: 9.546 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.6 | 2.1e-20 | 15 | 59 | 2 | 46 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 ri+n++ rqv fskRrng+lKK +EL +LCd+ev v+ifsst+ + Araip.H7YL9 15 RINNSTSRQVKFSKRRNGLLKKVKELAILCDVEVGVMIFSSTNSM 59 8*****************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.8E-28 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.478 | 6 | 59 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-21 | 7 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-19 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.3E-20 | 15 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-19 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-19 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MNRNATRRGK IAIRRINNST SRQVKFSKRR NGLLKKVKEL AILCDVEVGV MIFSSTNSMI 60 SPVPAAQESE KGKGWKRFEF DKDAPLEDEE IEVAEDDASL VKQIGQSFRY SKIEARRKEQ 120 IQAAHDEAMF GASALPPPTS TDNEPEQENE KEVDKKAVVT SLLSETVLAK RKGSWRDRVQ 180 ES |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.H7YL9 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ637177 | 8e-61 | HQ637177.1 Arachis hypogaea clone AHF-303L13 NBS-LRR gene cluster, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016206709.1 | 1e-107 | agamous-like MADS-box protein AGL16 | ||||
TrEMBL | A0A444ZX77 | 1e-130 | A0A444ZX77_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA05G01740.1 | 1e-60 | (Glycine max) | ||||
STRING | GLYMA17G10150.1 | 1e-60 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.2 | 3e-25 | AGAMOUS-like 16 |