PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.H6DP8
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 255aa    MW: 30012.3 Da    PI: 6.1969
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.H6DP8genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-194395456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +++f++eq++ Le  Fe+++++  +++ +LA+ lgL+ rqV +WFqNrRa++k
  Araip.H6DP8 43 KRRFSDEQIRSLECIFESESKLEPRKKIQLARDLGLQPRQVAIWFQNRRARWK 95
                 568*************************************************9 PP
2HD-ZIP_I/II121.54.2e-3941133193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  e+krr+s+eq+++LE  Fe+e+kLep++K +lar+Lglqprqva+WFqnrRAR+k+k++E++y++Lk++yd l+++ e+L+ke+++L+ elk+
  Araip.H6DP8  41 ENKRRFSDEQIRSLECIFESESKLEPRKKIQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDCLASRFESLKKEKDSLQLELKK 133
                  58**************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-183397IPR009057Homeodomain-like
PROSITE profilePS5007117.2973797IPR001356Homeobox domain
SMARTSM003891.2E-1640101IPR001356Homeobox domain
CDDcd000861.74E-144398No hitNo description
PfamPF000464.9E-174395IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.3E-1943104IPR009057Homeodomain-like
PRINTSPR000311.4E-56877IPR000047Helix-turn-helix motif
PROSITE patternPS0002707295IPR017970Homeobox, conserved site
PRINTSPR000311.4E-57793IPR000047Helix-turn-helix motif
PfamPF021832.1E-1097138IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MMDGDDEYIQ ASKGKNVESF TCSEVALPQN KNAKKKKSKI ENKRRFSDEQ IRSLECIFES  60
ESKLEPRKKI QLARDLGLQP RQVAIWFQNR RARWKSKRIE QEYRKLKDEY DCLASRFESL  120
KKEKDSLQLE LKKLNDLMVV SASHHDGRRQ EKVIAKGSRT DDGGSGSPHS NWRPNEEEEE  180
AKTSFSNDTV PLPSDDKPDE ERDHHRHHHH QDMRMDDEEQ HLEIPLESLE KWYSEDPSGI  240
LDQSCSTSQW LDFWT
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.H6DP8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016179670.10.0homeobox-leucine zipper protein ATHB-12
RefseqXP_025683040.10.0homeobox-leucine zipper protein ATHB-12
TrEMBLA0A445B6I31e-164A0A445B6I3_ARAHY; Uncharacterized protein
STRINGXP_007136490.15e-95(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-42homeobox 7