PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.H4PZ4
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 300aa    MW: 32194.3 Da    PI: 9.0255
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.H4PZ4genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.4e-10226279655
                  HHHHHHHHHHHHHHHHHHHCTSCC.C......TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPk.as...kapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri  ++ +L+el+P+ +    ++ ++  s a++L +Av++Ik Lq
  Araip.H4PZ4 226 SIAERERRTRISGKLKKLQELVPNmDKympHTMKPQTSYADMLDLAVQHIKGLQ 279
                  689*********************888**9999999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.198220278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-11223288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.47E-10224283No hitNo description
Gene3DG3DSA:4.10.280.106.2E-10226282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-9226284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-8226279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MYQPSSSSSS SSQAHNSTVS EPALTRYGSA PGSLLRTAVD AVIAGGAGGP RHPHPLMPTG  60
SHYFSGESSE STSKVNKTIG KTVNWIIVII VVRGGGGSGG GNYGSNSGRL KSQMSFTGQD  120
SLSQISEVSE SVVVDASTSE RAYAMDHCWD NSNSNSSSIV FSAPPSKRSK NIDGDILNCL  180
TALDSQYSLP QTALEMATME KLMHIPEDSV PCKIRAKRGC ATHPRSIAER ERRTRISGKL  240
KKLQELVPNM DKYMPHTMKP QTSYADMLDL AVQHIKGLQT QVQVRKNILD NCTCGCKPSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.H4PZ4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029144903.11e-118transcription factor bHLH128
SwissprotQ8H1021e-65BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A444XUN91e-106A0A444XUN9_ARAHY; Uncharacterized protein
STRINGXP_008380690.17e-96(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.24e-57bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]