PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.H30BW

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

G2-like

Protein Properties

Length: 421aa MW: 46683 Da PI: 8.1891

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.H30BW	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.1	2e-33	43	97	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LH+rF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl Araip.H30BW 43 KPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 97 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.489	40	100	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.4E-31	41	98	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-16	42	98	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.1E-23	43	98	IPR006447	Myb domain, plants
Pfam	PF00249	2.5E-9	45	96	IPR001005	SANT/Myb domain
Pfam	PF14379	2.0E-24	148	194	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MYHHQGKNMH SSSRMPIPSE RHMFLQTGNG SGDSGLVLST DAKPRLKWTP DLHARFIEAV 60 NQLGGADKAT PKTVMKLMGI PGLTLYHLKS HLQKYRLSKN LHGQTNTVTH KITTNAGATT 120 SERSLSEPSG THMNKLSLGP QANNRDLHIS EALQMQIEVQ RRLNEQLEVQ RHLQLRIEAQ 180 GKYLQSVLEK AQETLGRQNL GMVGLEAAKV QLSELVSKVS SQCLNSAFSE LKELQGFCPQ 240 QPQTNQPNDC SIDSCLTSCE GSQKEQEIQN GGIGLRHLNG HGHAFMERKG GTEAPKWSNE 300 VKNNTFLAPL GKNSERSSYG AERSSGNLSM SIGLERETEN GSSMYTESHT HTDGEFWHRN 360 SNRTEPKNEA MDGGRGSHDY RLPPPYFSAA RLDLNSHGDN NEAATTTTSC KQLDLNRFSW 420 S

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MYHHQGKNMH SSSRMPIPSE RHMFLQTGNG SGDSGLVLST DAKPRLKWTP DLHARFIEAV  60
NQLGGADKAT PKTVMKLMGI PGLTLYHLKS HLQKYRLSKN LHGQTNTVTH KITTNAGATT  120
SERSLSEPSG THMNKLSLGP QANNRDLHIS EALQMQIEVQ RRLNEQLEVQ RHLQLRIEAQ  180
GKYLQSVLEK AQETLGRQNL GMVGLEAAKV QLSELVSKVS SQCLNSAFSE LKELQGFCPQ  240
QPQTNQPNDC SIDSCLTSCE GSQKEQEIQN GGIGLRHLNG HGHAFMERKG GTEAPKWSNE  300
VKNNTFLAPL GKNSERSSYG AERSSGNLSM SIGLERETEN GSSMYTESHT HTDGEFWHRN  360
SNRTEPKNEA MDGGRGSHDY RLPPPYFSAA RLDLNSHGDN NEAATTTTSC KQLDLNRFSW  420
S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-19	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-19	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-19	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-19	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.H30BW

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016169975.1	0.0	myb-related protein 2 isoform X3
Refseq	XP_025671341.1	0.0	myb-related protein 2 isoform X1
Swissprot	Q9SQQ9	1e-137	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A445BWH3	0.0	A0A445BWH3_ARAHY; Uncharacterized protein
STRING	GLYMA12G31020.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3852	31	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-139	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]