PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.H1ZPF | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | DBB | ||||||||
Protein Properties | Length: 235aa MW: 25282.3 Da PI: 4.4495 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.8 | 8.3e-07 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC +C ++ H H++vpl Araip.H1ZPF 4 QCNVCEAAEAKVLCCADEAALCWECDEKVHAAnklaskHQRVPL 47 7******99*********************66899999999986 PP | |||||||
2 | zf-B_box | 29 | 2.2e-09 | 54 | 94 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 ++kC+ ++e +fC +++ llC++C +++H H Araip.H1ZPF 54 MPKCDICQEAFGYFFCLEDRALLCRKCDVAIHTAntyvsgH 94 799*******9*********************654455555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.765 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.39E-9 | 3 | 47 | No hit | No description |
SMART | SM00336 | 8.3E-11 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.5E-5 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.0E-15 | 52 | 99 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.101 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.1E-7 | 54 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.99E-9 | 55 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MKIQCNVCEA AEAKVLCCAD EAALCWECDE KVHAANKLAS KHQRVPLSMS SSHMPKCDIC 60 QEAFGYFFCL EDRALLCRKC DVAIHTANTY VSGHQRFLLT GVRVGLEATE PGGTSSTSLK 120 SDSGEKASDT KSSSVSRKVS MMPRSSDYNE MLPLDAGGVG EMPPAKESYG GGSTAGNISP 180 WPIEEFLGLN DFGQGYNYME GSSKADSGKL GDSDSPVLRS VEEEMGMEDD DDNCI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.H1ZPF |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020964958.1 | 1e-171 | B-box zinc finger protein 22 | ||||
Swissprot | Q9SYM2 | 5e-79 | BBX22_ARATH; B-box zinc finger protein 22 | ||||
TrEMBL | A0A444Y313 | 1e-169 | A0A444Y313_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA12G36260.4 | 1e-130 | (Glycine max) | ||||
STRING | XP_007149516.1 | 1e-131 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4566 | 34 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 9e-78 | light-regulated zinc finger protein 1 |