PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.H1W3S
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRF
Protein Properties Length: 529aa    MW: 57859.7 Da    PI: 7.7097
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.H1W3SgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC763.9e-24163206144
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                  d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e
  Araip.H1W3S 163 DPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVE 206
                  79***************************************998 PP
2QLQ62.51.1e-2197133137
          QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                  +aFT++Q+++L++Q+l+yKy+ an+PvP++Ll +i+k
  Araip.H1W3S  97 GAFTPSQWMELEQQALIYKYITANVPVPSHLLIPIKK 133
                  59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.9E-1397133IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.8E-1598131IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.73798133IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.847163207IPR014977WRC domain
PfamPF088791.0E-20164206IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
GETKHKWYGS GLLKQERSGG GNTNNEDDDE YWRSNKVAKT SINGERNSSS SLLRSNASLF  60
SDVGGNNQQQ QQMLSCHSWG SNSMHGNGNG NGIGMRGAFT PSQWMELEQQ ALIYKYITAN  120
VPVPSHLLIP IKKALHSAGF SHFFRPSAVG WAGFHLGFSN STDPEPGRCR RTDGKKWRCS  180
RDAVVDQKYC ERHMNRGRHR SRKPVEGHNG HALTGTTTST TTKNVVPGNT PPPYSSPPNT  240
ISRMFMTTTT TTNNKESNGS ERIPEAEDAL PMLPPTLELK PKEENPFIIP KHQIPYQQES  300
SRNEFGLVTS DSLLNPSQKS TTTLTDRETD SHHSLRHFID DWPKTQTHHR SALSSWPESE  360
RTELSISIPM TTTSNDFMSS TSSPTNDKLT LSPLRLSREL DPIQMGLGVG NNALSDSSNS  420
SRQANWIPIT WESSMGGPLG EVLNLSTNNN NGSDNNQCGK NNNSSSALNL MSDGWDNTNS  480
PPLGSSPTGV LQKTAFGSLS NSSAGSSPRA ENKTQEGSSL CNDLLMPAL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.H1W3S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016163885.10.0growth-regulating factor 1
RefseqXP_025665754.10.0growth-regulating factor 1
TrEMBLA0A445C8E70.0A0A445C8E7_ARAHY; Uncharacterized protein
STRINGGLYMA17G35090.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.15e-82growth-regulating factor 1