PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.H1PDA
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 437aa    MW: 49509.6 Da    PI: 8.6753
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.H1PDAgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.71.9e-1851137191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++  ++ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.H1PDA  51 KFYRNYAKVAGFSTRVRSTNRK--ENEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 137
                  6****************98887..7779*************998877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.7E-1651137IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MDDSTSDCQL NQGEVDYEFE SNEVLEPLSV VDDQFVPKVG MTFTTLEDAG KFYRNYAKVA  60
GFSTRVRSTN RKENEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG  120
AWIISKVVLD HSHPCCPSKA EMLKQYRELS MSIRRTIENN EEAGMRSTQR SESMHSFFNK  180
FITQNSSLIQ FVKQYDNCLE SREQAERESD AADFHTVIPC ATKSSIEAQF QDAYTHQKFR  240
EVQAQFRGKV NCITRLTNSA LGYSVYEVGE QVSSSIFNKF VPSVTEIYTG TMEQEGKEAT  300
QTHQEQPRRA TVGAKKQEEL TAILHRVYDN VMVEMESLKA KRKGTSSLSH EDANLESVNE  360
LQSPPRIRTR GRPKNRLGSK LDKQIVNATK KKKTKALNEL NLFDAASVVR SNSSQYQARV  420
MNYQFRVPAA ADNSLGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.H1PDA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020989760.11e-123protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A445CSB70.0A0A445CSB7_ARAHY; Uncharacterized protein
TrEMBLA0A445ESL40.0A0A445ESL4_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.16e-12FAR1 family protein