PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.H08Z9

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 583aa MW: 66923.3 Da PI: 8.8332

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.H08Z9	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.9	7.9e-19	67	153	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YAk++GF ++++ +++ +++ +++ +C++egkr+++ + ++t++ ++ +C a++ ++++k+g w ++k+ l+H+H++ Araip.H08Z9 67 QFYQNYAKRIGFVTKIRFTRRVGKDKVPKNQMITCNREGKRKSRVSP---IEKTNPRNNYNCPARISIRLNKEGLWIISKVCLDHSHPCD 153 6****************************************9877...99999******************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.8E-16	67	153	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.73	333	369	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.7E-5	333	366	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.3E-6	344	371	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 583 aa Download sequence Send to blast
MESVLEEQNI EICANSPPKT LFKGVPLLYP KNALNMFYDF LGVGAQFASN DVPKVGMCFG 60 TIEDANQFYQ NYAKRIGFVT KIRFTRRVGK DKVPKNQMIT CNREGKRKSR VSPIEKTNPR 120 NNYNCPARIS IRLNKEGLWI ISKVCLDHSH PCDPEMAKLL THNREMTMHM CRVIERNDEA 180 GVRPSKTYQV LVGAAGDIYE ERHRWVPIFL NNFFWAGMRS TQRSESMHSY FDKFINNKSL 240 LIQFVKQYDN CLGWKEQQER ETDVEDYKSI IPCATNSLIE KQFQGAYTNA KFKEVQKQFR 300 KKANCILHLM KVVSTSKVYS ILEDVSTSKE RVYEVNYNAE TKDITCMCQM FESRGILCRH 360 SLVVLGHERV REIPRRYILD RWSKLVKRRH SDIKSSHDPS LLDPKTKRFD DLCSHSNSVA 420 QFASQTKETS DILHRYLDMA MAECQKHVAN SSSNANELDN LLTLEDGGKD ALSIFVGGCI 480 ISIQDIKSPP YVSTKGRPTN RLGSEKDKMI KKKTEAKKRK SEITEKEDNQ HIGDSQSLPF 540 NEQLQDANYN VNEGFESDSM GGSMGGFMSL LNSIHSYQFS NVD

Sequence ? help Back to Top

Protein Sequence Length: 583 aa Download sequence Send to blast

MESVLEEQNI EICANSPPKT LFKGVPLLYP KNALNMFYDF LGVGAQFASN DVPKVGMCFG  60
TIEDANQFYQ NYAKRIGFVT KIRFTRRVGK DKVPKNQMIT CNREGKRKSR VSPIEKTNPR  120
NNYNCPARIS IRLNKEGLWI ISKVCLDHSH PCDPEMAKLL THNREMTMHM CRVIERNDEA  180
GVRPSKTYQV LVGAAGDIYE ERHRWVPIFL NNFFWAGMRS TQRSESMHSY FDKFINNKSL  240
LIQFVKQYDN CLGWKEQQER ETDVEDYKSI IPCATNSLIE KQFQGAYTNA KFKEVQKQFR  300
KKANCILHLM KVVSTSKVYS ILEDVSTSKE RVYEVNYNAE TKDITCMCQM FESRGILCRH  360
SLVVLGHERV REIPRRYILD RWSKLVKRRH SDIKSSHDPS LLDPKTKRFD DLCSHSNSVA  420
QFASQTKETS DILHRYLDMA MAECQKHVAN SSSNANELDN LLTLEDGGKD ALSIFVGGCI  480
ISIQDIKSPP YVSTKGRPTN RLGSEKDKMI KKKTEAKKRK SEITEKEDNQ HIGDSQSLPF  540
NEQLQDANYN VNEGFESDSM GGSMGGFMSL LNSIHSYQFS NVD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.H08Z9

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016178447.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
Refseq	XP_025685440.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445B541	0.0	A0A445B541_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	4e-34	far-red elongated hypocotyls 3