PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.GND3E

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Nin-like

Protein Properties

Length: 914aa MW: 102373 Da PI: 5.9041

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.GND3E	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88.9	4.1e-28	585	634	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+l++l+++F++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ Araip.GND3E 585 KTITLQVLRQHFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKV 634 89**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.439	573	654	IPR003035	RWP-RK domain
Pfam	PF02042	6.0E-25	586	634	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.61E-23	812	901	No hit	No description
Gene3D	G3DSA:3.10.20.240	4.2E-22	815	896	No hit	No description
SMART	SM00666	4.3E-24	818	901	IPR000270	PB1 domain
PROSITE profile	PS51745	26.329	818	901	IPR000270	PB1 domain
Pfam	PF00564	1.2E-19	819	899	IPR000270	PB1 domain
CDD	cd06407	1.23E-39	820	899	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 914 aa Download sequence Send to blast
MDFDYINELF VDGCWLAASS SSAAAAADGS ADFYVSSPSF SNPIFDPFSW PSLDTEQIES 60 QEREQEHEQQ QEQPPFSHDL VVAANNCSQN QQQQYHHYEN QSVENNNPNP NNPSEFFRRW 120 WIAPSSNPGP GSYVVEKLLK ALMCIKDVNR NKDMLIQIWI PVINRGGTQI LRTNGLPFSL 180 ESSSVNLAKY REISEVYQFS AEEDSKELVP GLPGRVYKEK VPEWTPDVRF FRSYEYPRVD 240 HAQVYDVRGS LALPIFEQGS KNCLGVVEVV MTQQKINYRP ELESVCQALE AVNLTSSKLP 300 TIQNVKRTSC EKSYETALPE IQEVLRSACE IHKLPLAQTW IPCIKQGKEG CRHSEDNYPH 360 CISPVEHACY VGDPSIQVFH EACSEHHLLK GQGVAGGAFM TNQPCFAPDI TLLSKTDYPL 420 SHHARMFGLR AAVAIRLRSI YNSSDDFVLE FFLPLECIDN DEQKKMLTSL SLIIQRVCHS 480 LRVISDKEVE EETDFSAEVI AHEDSGTFAS AAAWPEPLQS QIVASLGAQE KSSETMGTSF 540 SDQRQQQQES SVLKGNLDSN GECSTYNVGN LSSKTGDKKK SKVDKTITLQ VLRQHFAGSL 600 KDAAKNIGVC TTTLKRICRQ HGIKRWPSRK IKKVGHSLQK LQLVIDSVQG ASGAFQIDSF 660 YSKFPDLAAS PNLSGTSLFS NLKQCDNNPN SLSIQPDPGS LSPEGASKSP SSSCSQSSIS 720 SHPCSSMAEQ QNHHHTNNNF DSSKDQMVLL VGENSSGDGL LKRIRSEAEL KSLNEDRAKV 780 VMPRSQSQET LGQHNLKNGH HGSLSRTKSK GTQKEDAPYR VKVTYGDEKA RFKMPKNWGY 840 EDLVQEVGRR FCISDMNKFD LKYLDDDYEW VLLTCDDDLE ECIEVCQSSE STTIKLCLQF 900 SNTNHSMRNP LEFR

Sequence ? help Back to Top

Protein Sequence Length: 914 aa Download sequence Send to blast

MDFDYINELF VDGCWLAASS SSAAAAADGS ADFYVSSPSF SNPIFDPFSW PSLDTEQIES  60
QEREQEHEQQ QEQPPFSHDL VVAANNCSQN QQQQYHHYEN QSVENNNPNP NNPSEFFRRW  120
WIAPSSNPGP GSYVVEKLLK ALMCIKDVNR NKDMLIQIWI PVINRGGTQI LRTNGLPFSL  180
ESSSVNLAKY REISEVYQFS AEEDSKELVP GLPGRVYKEK VPEWTPDVRF FRSYEYPRVD  240
HAQVYDVRGS LALPIFEQGS KNCLGVVEVV MTQQKINYRP ELESVCQALE AVNLTSSKLP  300
TIQNVKRTSC EKSYETALPE IQEVLRSACE IHKLPLAQTW IPCIKQGKEG CRHSEDNYPH  360
CISPVEHACY VGDPSIQVFH EACSEHHLLK GQGVAGGAFM TNQPCFAPDI TLLSKTDYPL  420
SHHARMFGLR AAVAIRLRSI YNSSDDFVLE FFLPLECIDN DEQKKMLTSL SLIIQRVCHS  480
LRVISDKEVE EETDFSAEVI AHEDSGTFAS AAAWPEPLQS QIVASLGAQE KSSETMGTSF  540
SDQRQQQQES SVLKGNLDSN GECSTYNVGN LSSKTGDKKK SKVDKTITLQ VLRQHFAGSL  600
KDAAKNIGVC TTTLKRICRQ HGIKRWPSRK IKKVGHSLQK LQLVIDSVQG ASGAFQIDSF  660
YSKFPDLAAS PNLSGTSLFS NLKQCDNNPN SLSIQPDPGS LSPEGASKSP SSSCSQSSIS  720
SHPCSSMAEQ QNHHHTNNNF DSSKDQMVLL VGENSSGDGL LKRIRSEAEL KSLNEDRAKV  780
VMPRSQSQET LGQHNLKNGH HGSLSRTKSK GTQKEDAPYR VKVTYGDEKA RFKMPKNWGY  840
EDLVQEVGRR FCISDMNKFD LKYLDDDYEW VLLTCDDDLE ECIEVCQSSE STTIKLCLQF  900
SNTNHSMRNP LEFR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.GND3E

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016167149.2	0.0	protein NLP4
TrEMBL	A0A445CD51	0.0	A0A445CD51_ARAHY; Uncharacterized protein
STRING	GLYMA04G01910.3	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein