PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.G72RX | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | LBD | ||||||||
Protein Properties | Length: 208aa MW: 23167.1 Da PI: 6.6048 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.5 | 1e-38 | 9 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasnv+kll++lp +r +a+ ++ +eA+ar++dP+yG+v++i++lqqq+++l+a+la+l Araip.G72RX 9 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLAHLPVADRCEAAVTISFEAQARLQDPIYGCVAHIFALQQQVMNLQAQLAYL 106 7*************************89*********************************************************************9 PP DUF260 98 kee 100 +e+ Araip.G72RX 107 REQ 109 987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.809 | 8 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.5E-37 | 9 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MKMTGSGTPC GACKFLRRKC VRGCVFAPYF CHEQGATHFA AIHKVFGASN VSKLLAHLPV 60 ADRCEAAVTI SFEAQARLQD PIYGCVAHIF ALQQQVMNLQ AQLAYLREQA AESCNLNPNN 120 TTALYPNHQD LGNSFQMENS TMVPQFLSDS SSNYPSSATQ QYHGNTRSSL IMMESNPIEN 180 YENSSISFDE TCDTVFFDMK RLWPSQLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-35 | 5 | 103 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-35 | 5 | 103 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.G72RX |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 2e-83 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016204735.1 | 1e-157 | LOB domain-containing protein 29 | ||||
Refseq | XP_025662269.1 | 1e-157 | LOB domain-containing protein 29 | ||||
Swissprot | Q9M2J7 | 9e-68 | LBD29_ARATH; LOB domain-containing protein 29 | ||||
TrEMBL | A0A444YGG8 | 1e-156 | A0A444YGG8_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA19G34600.1 | 2e-90 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3571 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 4e-70 | lateral organ boundaries-domain 29 |
Publications ? help Back to Top | |||
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