PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.G4BMM
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 159aa    MW: 18235.7 Da    PI: 10.202
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.G4BMMgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.21.6e-313786150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyey+
  Araip.G4BMM 37 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYA 86
                 79***********************************************8 PP
2K-box46.81.2e-16871233470
        K-box  34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 
                  ++Rh+lGe L++LslkeL++Le++Lek+l+++Rs+K 
  Araip.G4BMM  87 NNRHILGEALSTLSLKELKNLESRLEKGLSRVRSRKV 123
                  78*********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.8242989IPR002100Transcription factor, MADS-box
SMARTSM004324.6E-422988IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-303089IPR002100Transcription factor, MADS-box
CDDcd002652.29E-383088No hitNo description
PROSITE patternPS0035003185IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-333151IPR002100Transcription factor, MADS-box
PfamPF003194.7E-273885IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-335166IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-336687IPR002100Transcription factor, MADS-box
PfamPF014864.1E-1286123IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MELPHQSQSG GGGDAHRIDH EGSSSQKRMG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA  60
YELSVLCDAE VALVVFSSRG RLYEYANNRH ILGEALSTLS LKELKNLESR LEKGLSRVRS  120
RKVYNFFHIT LHYMWNINIS RVSNIFGHSK DDNESHAFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-212988160Myocyte-specific enhancer factor 2B
1tqe_Q4e-212988160Myocyte-specific enhancer factor 2B
1tqe_R4e-212988160Myocyte-specific enhancer factor 2B
1tqe_S4e-212988160Myocyte-specific enhancer factor 2B
6c9l_A4e-212988160Myocyte-specific enhancer factor 2B
6c9l_B4e-212988160Myocyte-specific enhancer factor 2B
6c9l_C4e-212988160Myocyte-specific enhancer factor 2B
6c9l_D4e-212988160Myocyte-specific enhancer factor 2B
6c9l_E4e-212988160Myocyte-specific enhancer factor 2B
6c9l_F4e-212988160Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.G4BMM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1788379e-45AY178837.1 Momordica charantia mads-box transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016203283.15e-74agamous-like MADS-box protein AGL5, partial
RefseqXP_025626279.19e-74agamous-like MADS-box protein AGL5
RefseqXP_025626280.19e-74agamous-like MADS-box protein AGL5
SwissprotQ93XH41e-48MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A445AM032e-72A0A445AM03_ARAHY; Uncharacterized protein
STRINGGLYMA02G45730.44e-53(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.27e-51MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]