PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.G2FC5

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

HSF

Protein Properties

Length: 485aa MW: 54834.6 Da PI: 5.2679

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.G2FC5	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	99.1	4.4e-31	20	117	2	101
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT......TEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY......gFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl k+y++++d+++++++sw+ +++nsfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+Y gF+k++ ++ weF+++ F k++k Araip.G2FC5 20 FLLKTYDMVDDSATDDIVSWNsSTNNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYmmfedtGFHKIH---------PERWEFANDDFIKDQK 107 9******************8889*******************************544444444444.........566********* PP XXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkk 101 +ll++i+r+k Araip.G2FC5 108 HLLKNIHRRK 117 ******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.4E-33	16	116	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.7E-53	16	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.27E-31	16	116	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.6E-13	20	43	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	3.7E-27	20	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.6E-13	59	71	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.6E-13	72	84	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MEGGAPQSTG GGAGGGPAPF LLKTYDMVDD SATDDIVSWN SSTNNSFVVW NPPEFARLLL 60 PTYFKHNNFS SFIRQLNTYM MFEDTGFHKI HPERWEFAND DFIKDQKHLL KNIHRRKPIH 120 SHSHPPGSVV DPERAAFEEE IEKLNREKSS IESNIFSFKQ HQSTAKLHLE EFQQRLDGME 180 KRQKHLLNIF EKALQNPTFV EQFSRKIESM DLSAYNKKRR LPQVDDMQPV VESSFVDNPN 240 NFRMEFGNVF HQDFSNKLRL ELSPAVSDMN LVSRSTQSSN EDGESPQKKI SEGEQTGIQT 300 RTSVPFAPET LELADTGASF TFKMDSCLSQ RATNAESPKL CTLEPSSEEG DSHISCQLTL 360 ASCPFKVNRN SYSAKASQID SQEIGKLAEP RFHSNSKESN GGVFSNRNQA NDATNLASSL 420 ETPSNNQVTQ PNRVNDVFWE QFLTERPGCS DNEEAISNYR GNPCDEQDEG RLNARNVKNM 480 DQLTL

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MEGGAPQSTG GGAGGGPAPF LLKTYDMVDD SATDDIVSWN SSTNNSFVVW NPPEFARLLL  60
PTYFKHNNFS SFIRQLNTYM MFEDTGFHKI HPERWEFAND DFIKDQKHLL KNIHRRKPIH  120
SHSHPPGSVV DPERAAFEEE IEKLNREKSS IESNIFSFKQ HQSTAKLHLE EFQQRLDGME  180
KRQKHLLNIF EKALQNPTFV EQFSRKIESM DLSAYNKKRR LPQVDDMQPV VESSFVDNPN  240
NFRMEFGNVF HQDFSNKLRL ELSPAVSDMN LVSRSTQSSN EDGESPQKKI SEGEQTGIQT  300
RTSVPFAPET LELADTGASF TFKMDSCLSQ RATNAESPKL CTLEPSSEEG DSHISCQLTL  360
ASCPFKVNRN SYSAKASQID SQEIGKLAEP RFHSNSKESN GGVFSNRNQA NDATNLASSL  420
ETPSNNQVTQ PNRVNDVFWE QFLTERPGCS DNEEAISNYR GNPCDEQDEG RLNARNVKNM  480
DQLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-17	1	116	8	129	Heat shock factor protein 1
5d5v_B	1e-17	1	116	8	129	Heat shock factor protein 1
5d5v_D	1e-17	1	116	8	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.G2FC5

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016175574.1	0.0	heat stress transcription factor A-5
Refseq	XP_025674759.1	0.0	heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-161	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A445AB17	0.0	A0A445AB17_ARAHY; Uncharacterized protein
STRING	GLYMA05G28460.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4961	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-163	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]