PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.G2BMD
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 1340aa    MW: 149008 Da    PI: 6.5871
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.G2BMDgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.001312261251123
                   EEET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                   ++C    C++sF +k +L+ H r+ +
  Araip.G2BMD 1226 HRCDldGCSMSFMTKGELQLHRRNlC 1251
                   789999*****************876 PP
2zf-C2H211.60.0008613091335123
                   EEET..TTTEEESSHHHHHHHHHH..T CS
      zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                   ykC+   Cg sF+  s++ rH r+  H
  Araip.G2BMD 1309 YKCKveGCGLSFRFVSDFSRHRRKtgH 1335
                   99*********************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.4E-141555IPR003349JmjN domain
PROSITE profilePS5118314.1041657IPR003349JmjN domain
PfamPF023751.3E-151750IPR003349JmjN domain
PROSITE profilePS5118433.633292461IPR003347JmjC domain
SMARTSM005582.2E-45292461IPR003347JmjC domain
SuperFamilySSF511971.57E-26293458No hitNo description
PfamPF023735.4E-36325444IPR003347JmjC domain
Gene3DG3DSA:3.30.160.609.8E-612171248IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.612261248IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.5112491278IPR007087Zinc finger, C2H2
SMARTSM003550.8312491273IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.48E-512501282No hitNo description
PROSITE patternPS00028012511273IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.9E-412561279IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.73912791308IPR007087Zinc finger, C2H2
SMARTSM003550.002512791303IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.3E-1012801303IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028012811303IPR007087Zinc finger, C2H2
SuperFamilySSF576678.3E-1112891331No hitNo description
Gene3DG3DSA:3.30.160.601.6E-1113041332IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.49413091340IPR007087Zinc finger, C2H2
SMARTSM003550.2213091335IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013111335IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1340 aa     Download sequence    Send to blast
MGNVEIPNWL KGLPLAPEFR PTDTEFADPI AYISKIEKEA SNYGICKIIP PLPKPSKKYV  60
FSNLNKSLLK ASELGPESNS LGCCNSSRTD SRDVSSSDRL LRAVFTTRQQ ELGQNVKKIS  120
KGNVQNPLPG GQKQVWQSGE VYTLDQFESK SKSFAKSVLA TVKEVSPLVI EAMFWKATSE  180
KPIYIEYAND VPGSAFGESQ GQFLYSHRRR RKRTYYKSRP HSTDSKQTEM DGIGDTQIDE  240
NKGASAKTHA EQCVQSQTAS TVTLASNEFS QSSREKGSDA ADDDMEGTAG WKLSNSPWNL  300
QVIARSSGSL TRFMPDDIPG VTSPMVYIGM LFSWFAWHVE DHELHSLNFL HTGSAKTWYA  360
VPGEYAFAFE EVIRSKAYGS SVDHLAALKL LGEKTTLISP EVVVASGIPC CRLIQNPGEF  420
VVTFPRAYHV GFSHGFNCGE AANFGTPQWL TVAKEAAVRR AAMNYLPMLS HQQLLYLLTM  480
SFISRVPRTL LPGVRSSRLR DRQKEERDKD CSLPEVSAAE TAMVDMPNTS SGDKIGHSLI  540
DEMSLYMENL NGLYLDCDDL PSHFQTDSGA LACVGCGILG FPFMTVVQPS EKWMETLPGQ  600
DCTLNSTARS SVSGNDSVSK LPAAKELPDQ SFDCSNCWNM ANKFLRPRIF CLEHAVQIVE  660
MLQCKGGANV LIICHSDYEK IKAHARAVAE ETHIAFDYNN VPLDTASPEN LTLIDLAIDG  720
EEYDECEDWT SNLGINLHHC VNARNTSPSK QAIWTLALGM LFSDKGPGSQ FIAINWQSRR  780
ARSKRLHHLA PMKPKPSIAI QKREDDELEG RIDDSIAKKK LIQYSRRKFK SNKNSYSGSS  840
IVHELQEKSK IVSADSSGDH YKCGSKGELD ADNFKSDCAL PNASASIAVS PVDHEIQGTE  900
FPNSISLNAD TSQTSNSSPG HRFVNENVET EIENHTLQDL AIDGEKDEQS KIHHDTGVLE  960
TSGKEELGCQ DNKYSRSLVN STERNVDIDC KCDSLDLDEG LHRENPSACK SNNEEAASSS  1020
VSLANQPVLA SIDDALTELA SESAKQCKVQ ENNTIYKEPV SSNVARGNTR SEAILELGCS  1080
EVAVETCSQE ENELKIQPNN RINEEDNSSP KTPLKEDING SEDKLSQDML TEQESCKLSN  1140
PVPRSNARKK RKTELDQITE NQLSCNNFIR SPCEGLRPRA TKIAPEKSEG DADQDDKENP  1200
KARRDRKPSE VPAAHKNKKD DVEKPHRCDL DGCSMSFMTK GELQLHRRNL CPHKGCGKKF  1260
SSHKYALLHQ RVHDDKRPLK CPWKGCTMSF KWAWARTEHI RVHTGEKPYK CKVEGCGLSF  1320
RFVSDFSRHR RKTGHYVKSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A3e-54284475146346Transcription factor jumonji (Jmj) family protein
6ip4_A3e-54284475146346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
111421151PRSNARKKRK
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.G2BMD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016173843.10.0probable lysine-specific demethylase ELF6
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLA0A444XSN00.0A0A444XSN0_ARAHY; Uncharacterized protein
STRINGXP_004496256.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80313034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  4. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]