PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.FW1RB | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 227aa MW: 25898.3 Da PI: 6.5094 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 72.8 | 7.3e-23 | 75 | 169 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYneY++ GFs+r+sk + +g i+++ fvCs++g+r+ ++ + ++++ +r++ r+gC+a++kv+ ++ +g+w+v+ ++ eHnHe+ Araip.FW1RB 75 DFYNEYGRIKGFSIRRSKVGRCkkaGSEGDIIWQIFVCSRQGERDAKHIHrNDRKMDPRPVMRCGCNARIKVHVDSkNGRWYVEFFSDEHNHEML 169 6***************98766622256789**************9998774677788*****************999***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-20 | 75 | 169 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MGCKVDEDPI ENETFVAETE SVLIGASHSD DQRDVIVLDG IGLFGAIDFD AIDFDALRAE 60 EIMMIEFVDL KTAYDFYNEY GRIKGFSIRR SKVGRCKKAG SEGDIIWQIF VCSRQGERDA 120 KHIHRNDRKM DPRPVMRCGC NARIKVHVDS KNGRWYVEFF SDEHNHEMLE ARFRGMMRSH 180 RAIKTGDLHQ INTMRSSGLR VPTIFRAFAN QSGGFEMVGF QSSCVGE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.FW1RB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025673381.1 | 1e-157 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A445D6S4 | 1e-136 | A0A445D6S4_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3290 | 7 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-18 | FAR1-related sequence 5 |