PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.FNA3E

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 503aa MW: 57929.2 Da PI: 8.0732

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.FNA3E	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	34.1	9.1e-11	83	149	1	67
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklk 67 +fY +YAk++GF +++++++ k+ + +++ + C++eg+re++ k + r++ t t Cka+++ Araip.FNA3E 83 EFYANYAKKLGFVTKVRNTNFDktrKDAKIPINQSLHCTREGYRESHVKV---ATRSNRITATRCKARMV 149 6*********988777665534344555699*********9888...899999*******95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-8	83	149	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.668	294	332	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MERSNPEGKP NSTVINASEG NDELNDDGVV NQEGSLVDEI TDVMVMRNDE LDLRHELPDH 60 SGLSEAEIPV IGMSFDSLPL AQEFYANYAK KLGFVTKVRN TNFDKTRKDA KIPINQSLHC 120 TREGYRESHV KVATRSNRIT ATRCKARMVE LRHSHPCSAE KAVHYHEYRE LTKHAKYVIT 180 DNDEAGIRPN KTYLALANEV DLYANRRKWL PIFFKTEFWA GMRSTQRSEQ HARILWWIPA 240 LQEWFVHKYD NVLGTKEQKE LEDDAADSKG AIPCIGSTGI ERQFQQEYTS NMFRTLQLEF 300 DPLSQKSRCE CNKFESVGIL CYHIFAVWSY YRVDTVPSCY VLPRWSKNVI RKYTYIKSIH 360 DVARSNESHN MFRQLCSEFY NVAQEFVACE EEATILLTDH RASMRFTTLD GTQNTIPTQS 420 TCGGPSRVKT KGRPKSKRLG AELDKSIKKS MEKRKRKSQP DVVDLQTDND RHGSVNNRLG 480 DSTIWNSSDG GRFMDLLNSF RHI

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MERSNPEGKP NSTVINASEG NDELNDDGVV NQEGSLVDEI TDVMVMRNDE LDLRHELPDH  60
SGLSEAEIPV IGMSFDSLPL AQEFYANYAK KLGFVTKVRN TNFDKTRKDA KIPINQSLHC  120
TREGYRESHV KVATRSNRIT ATRCKARMVE LRHSHPCSAE KAVHYHEYRE LTKHAKYVIT  180
DNDEAGIRPN KTYLALANEV DLYANRRKWL PIFFKTEFWA GMRSTQRSEQ HARILWWIPA  240
LQEWFVHKYD NVLGTKEQKE LEDDAADSKG AIPCIGSTGI ERQFQQEYTS NMFRTLQLEF  300
DPLSQKSRCE CNKFESVGIL CYHIFAVWSY YRVDTVPSCY VLPRWSKNVI RKYTYIKSIH  360
DVARSNESHN MFRQLCSEFY NVAQEFVACE EEATILLTDH RASMRFTTLD GTQNTIPTQS  420
TCGGPSRVKT KGRPKSKRLG AELDKSIKKS MEKRKRKSQP DVVDLQTDND RHGSVNNRLG  480
DSTIWNSSDG GRFMDLLNSF RHI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.FNA3E

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015971718.1	1e-167	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_016206358.1	1e-171	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025661319.1	1e-171	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445BNX4	0.0	A0A445BNX4_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13637	2	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-16	FAR1-related sequence 5