PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.FJ1BH
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 129aa    MW: 14815.3 Da    PI: 10.0758
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.FJ1BHgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF627e-202068149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 krienk n q+ f+kR+ g+lKKA+E+  LCda v +ii+ss+gk y y
  Araip.FJ1BH 20 KRIENKKNCQIAFTKRKDGLLKKANEIKYLCDAGVDLIIYSSSGKAYCY 68
                 79*******************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.0861272IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-201271IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-221377IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-191434IPR002100Transcription factor, MADS-box
PfamPF003197.4E-182168IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-193449IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-194970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MENGGEMIKK IKGRQKRDIK RIENKKNCQI AFTKRKDGLL KKANEIKYLC DAGVDLIIYS  60
SSGKAYCYGD SSLKTIKMAL SNEQQPQDSN QFLGYIMEEM SRMDMQNLVK KNNSLVKGII  120
EYHILKKSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-141389278MEF2 CHIMERA
6bz1_B2e-141389278MEF2 CHIMERA
6bz1_C2e-141389278MEF2 CHIMERA
6bz1_D2e-141389278MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.FJ1BH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016199242.12e-79floral homeotic protein AGAMOUS-like
RefseqXP_025651960.12e-79floral homeotic protein AGAMOUS-like
SwissprotQ015408e-17AG_BRANA; Floral homeotic protein AGAMOUS
TrEMBLA0A444Z8V75e-78A0A444Z8V7_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1915424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.12e-18AGAMOUS-like 16