PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.FF4HT

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 482aa MW: 56416.1 Da PI: 9.3242

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.FF4HT	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	34.4	7.5e-11	30	111	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 kfY+ Y+k + Fs++++++++ ++i+++ vC++eg+ +++ ++ + +t+++ +C ++ + g+w ++k++l+H+H+ +p Araip.FF4HT 30 KFYKYYSKLASFSTKIRNMTRD--GDKIKNQLIVCTREGRWKSKISS---TLKTNTSAGLNCPVRI----YDVGVWTISKVVLNHSHPYCP 111 6**************99887..8889********9999877...7788888888887655....3569***********9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.5E-8	30	111	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MANKRTSCIV DERFVPKVGM IFETLEEAAK FYKYYSKLAS FSTKIRNMTR DGDKIKNQLI 60 VCTREGRWKS KISSTLKTNT SAGLNCPVRI YDVGVWTISK VVLNHSHPYC PKRAEMVKQH 120 RELSMFVHRT IEIHEEAGIR PSKTYQSFVA AAGSHRKLEL YEDRDIWILV YLDHHFWVGM 180 RSTQRSESMH SFFNKFITRN SSLRQFVKQY DNCLVSREQT EREFDAADFH TMIPCATKSV 240 TEAQFQYVYT HEKFREVQAQ FRGKVNCITK SMHSTLGFTT YEVIEQVSNS TFNKFFVTYD 300 AVSQEVKCQY LLFESRGILC RHSLSVLNFE RVDNVAPKYI LERWSKNIKR RHTHIKSSQD 360 EPLLEPRSKR FDELMFQSHN ICEFASESEE LTRILHRAFD KISNAMKKKK KTAPSELNLL 420 DARSSIQSSS TLYNAPDMNY LREDYTNSGS SIQSSSTLYN VPYMNYPRED YTKSLGVFET 480 EY

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MANKRTSCIV DERFVPKVGM IFETLEEAAK FYKYYSKLAS FSTKIRNMTR DGDKIKNQLI  60
VCTREGRWKS KISSTLKTNT SAGLNCPVRI YDVGVWTISK VVLNHSHPYC PKRAEMVKQH  120
RELSMFVHRT IEIHEEAGIR PSKTYQSFVA AAGSHRKLEL YEDRDIWILV YLDHHFWVGM  180
RSTQRSESMH SFFNKFITRN SSLRQFVKQY DNCLVSREQT EREFDAADFH TMIPCATKSV  240
TEAQFQYVYT HEKFREVQAQ FRGKVNCITK SMHSTLGFTT YEVIEQVSNS TFNKFFVTYD  300
AVSQEVKCQY LLFESRGILC RHSLSVLNFE RVDNVAPKYI LERWSKNIKR RHTHIKSSQD  360
EPLLEPRSKR FDELMFQSHN ICEFASESEE LTRILHRAFD KISNAMKKKK KTAPSELNLL  420
DARSSIQSSS TLYNAPDMNY LREDYTNSGS SIQSSSTLYN VPYMNYPRED YTKSLGVFET  480
EY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.FF4HT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025692433.1	1e-168	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A445B036	0.0	A0A445B036_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	4e-31	far-red elongated hypocotyls 3