PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.FC1S9

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 366aa MW: 42791.2 Da PI: 9.8143

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.FC1S9	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.6	1.5e-16	27	113	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++Y+k +GFs++++++++ ++i+++ vCs+eg+ +++ + + +t+++ +C a++ v+ +k + w ++k++l+H+H+ +p Araip.FC1S9 27 KFYKHYSKLAGFSTKIRNTTRD--GNKIKNQLIVCSREGRWKSKISP---TLKTNPSAGLNCPARIYVHIMKdVSLWTISKVVLNHSHPYCP 113 6**************98777..777999******9998777...999**************9899***********9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-13	27	113	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.939	273	309	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.1E-4	283	306	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.5E-4	284	311	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MQTSCVVDEK FVPKVGIIFK TLEEVRKFYK HYSKLAGFST KIRNTTRDGN KIKNQLIVCS 60 REGRWKSKIS PTLKTNPSAG LNCPARIYVH IMKDVSLWTI SKVVLNHSHP YCPDQVEMLK 120 QHRELSIFHA LFSVHRNLQI RAVRGSAYMD SDLLGSPLLS WDEKHTKERE YAFIFQQNSS 180 LRQFVKQYDN CLASREQVER EFDAVDFHTV IPCTTKSAIE AQFQCVYTHE KFREVQAQFR 240 GKVNCITRSM HSTLSFTTYE VIEQVFNSTF NKFIVTYDAV SRDVKCHCLL FEFRGILCRH 300 SLSVLSFERV DNVTPKYILE RWSKNIKRRH THIKSSQDEP VLEPRSKRFD ELVSRSHNIC 360 KFASKS

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MQTSCVVDEK FVPKVGIIFK TLEEVRKFYK HYSKLAGFST KIRNTTRDGN KIKNQLIVCS  60
REGRWKSKIS PTLKTNPSAG LNCPARIYVH IMKDVSLWTI SKVVLNHSHP YCPDQVEMLK  120
QHRELSIFHA LFSVHRNLQI RAVRGSAYMD SDLLGSPLLS WDEKHTKERE YAFIFQQNSS  180
LRQFVKQYDN CLASREQVER EFDAVDFHTV IPCTTKSAIE AQFQCVYTHE KFREVQAQFR  240
GKVNCITRSM HSTLSFTTYE VIEQVFNSTF NKFIVTYDAV SRDVKCHCLL FEFRGILCRH  300
SLSVLSFERV DNVTPKYILE RWSKNIKRRH THIKSSQDEP VLEPRSKRFD ELVSRSHNIC  360
KFASKS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.FC1S9

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015960283.1	1e-142	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A444Z1D5	0.0	A0A444Z1D5_ARAHY; Uncharacterized protein
STRING	XP_004490233.1	2e-45	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	2e-21	far-red elongated hypocotyls 3