PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.F8I62 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NAC | ||||||||
Protein Properties | Length: 425aa MW: 47885 Da PI: 8.6637 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107.1 | 2.2e-33 | 29 | 116 | 40 | 128 |
NAM 40 ykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++P +L++++k++++ewyfFs dkky +g r nrat++gyWkatg+d++v++ ++++vglkktLvf++grap+g++t+Wvmheyrl Araip.F8I62 29 TGANPGTLQSRLKTRDQEWYFFSALDKKYGNGGRMNRATSKGYWKATGNDRPVKH-EQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRL 116 4569****99999******************************************.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 37.565 | 1 | 144 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-16 | 12 | 116 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.89E-39 | 29 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MRSLLSITSS ARFVAKASDL MQFLRLTSTG ANPGTLQSRL KTRDQEWYFF SALDKKYGNG 60 GRMNRATSKG YWKATGNDRP VKHEQRTVGL KKTLVFHSGR APDGKRTNWV MHEYRLVDEE 120 LERARSGSSQ PQKDAYVLCR VFHKNNIGPP NGQRYAPFVE EEWDDASALV PGAEPVEDVT 180 VTVAHPLRIE SNGRTLCSDR RNNVAQDTQS NNKVPFDVNK LPIETQSLLA VCKRESMAEF 240 PSPEKEDNSK RQIDEYPLPQ TENTKPISQI YKRRRHYLNV NHSNVNGDSV RTIQEPPCSS 300 TITTAATTLP TATTTASTAI TNVAPKKHFL SALVEFSLME SLESKGNPSV QPPEFDDASL 360 EASVPPNCVK LIKRMQGEIY KLSEERETMR FEMMSAQAMI NMLESRIEIL SKENEELKSM 420 INNNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-30 | 32 | 146 | 56 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00612 | ChIP-seq | Transfer from AT3G10490 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.F8I62 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010523 | 3e-31 | AP010523.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT23O16, TM1810, complete sequence. | |||
GenBank | AP010524 | 3e-31 | AP010524.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT34P16, TM1824, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015941129.1 | 0.0 | uncharacterized protein LOC107466647 | ||||
Refseq | XP_025619941.1 | 0.0 | NAC domain containing protein 50 isoform X1 | ||||
TrEMBL | A0A444XRL2 | 0.0 | A0A444XRL2_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA20G33430.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8189 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.1 | 2e-83 | NAC domain containing protein 50 |