PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.ERV29
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 271aa    MW: 31387 Da    PI: 7.3239
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.ERV29genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.2e-1891146156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  r k+ ++t++q++ Le+ F+++ +++++++ +L+++lgL+ rq+ vWFqNrR+++k
  Araip.ERV29  91 REKKKRLTSSQIDLLERSFQEEIKLDTDRKMKLSRELGLQPRQIAVWFQNRRTRWK 146
                  567888*************************************************9 PP
2HD-ZIP_I/II1071.5e-3492184193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekk+rl++ q+ lLE+sF+ee kL+++rK++l+reLglqprq+avWFqnrR R+k+kql + y aLk+++d++++e+++L++ev  L+++l+e
  Araip.ERV29  92 EKKKRLTSSQIDLLERSFQEEIKLDTDRKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLKHLYFALKQEFDHISNEKHKLQEEVMMLKARLRE 184
                  69**************************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.11E-1878149IPR009057Homeodomain-like
PROSITE profilePS5007117.37888148IPR001356Homeobox domain
SMARTSM003891.6E-1690152IPR001356Homeobox domain
CDDcd000867.61E-1591149No hitNo description
PfamPF000461.0E-1591146IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.4E-1994152IPR009057Homeodomain-like
PROSITE patternPS000270123146IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MPSGTDIIIT DRIMDWNFEM KTLEEGEVME WNESTRSFAP RAESSLSFFH NYSSSSSNPS  60
YPGSEVKQAA LVETPQESLH AMAEVKYAGH REKKKRLTSS QIDLLERSFQ EEIKLDTDRK  120
MKLSRELGLQ PRQIAVWFQN RRTRWKAKQL KHLYFALKQE FDHISNEKHK LQEEVMMLKA  180
RLREQAFRAH VSGVYTDMSG AETVESTSEM LHGSKGMINN NNNNNNNNNN NNNNNNNNNN  240
QQIVDGYSCF LVEDHRNTVP LPRWAVAPYC P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140148RRTRWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.ERV29
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020961187.11e-158homeobox-leucine zipper protein ATHB-22-like
SwissprotQ9LZR04e-43ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A444YP781e-134A0A444YP78_ARAHY; Uncharacterized protein
STRINGGLYMA13G21330.12e-78(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.15e-43homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]