PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.EGQ9J | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 27717.2 Da PI: 5.6835 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3e-17 | 5 | 50 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd ll+++++q+G g W++++ g++R++k+c++rw++yl Araip.EGQ9J 5 AWTEEEDHLLKKCIQQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYL 50 7*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.6 | 9.3e-16 | 56 | 100 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ +eE e +v+++k+lG++ W++Ia +++ gRt++++k++w+ + Araip.EGQ9J 56 RGNFAEEEVEMIVKLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNCH 100 8999******************.*********.***********977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.777 | 1 | 50 | IPR017930 | Myb domain |
SMART | SM00717 | 5.8E-13 | 2 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-21 | 5 | 57 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-15 | 5 | 50 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.5E-27 | 5 | 97 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.56E-10 | 5 | 50 | No hit | No description |
PROSITE profile | PS51294 | 24.951 | 51 | 105 | IPR017930 | Myb domain |
SMART | SM00717 | 4.7E-15 | 55 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-13 | 56 | 98 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.20E-10 | 58 | 101 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-24 | 58 | 106 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGGVAWTEEE DHLLKKCIQQ YGEGKWHRVP LLAGLNRCRK SCRLRWLNYL RPNIKRGNFA 60 EEEVEMIVKL HKLLGNRWSL IAGRLPGRTA NDVKNYWNCH LSKKLNAMEG EERSQATKNV 120 EVIRPQARNI GTSSSMKRRR GIQGESSSPI ESDLLAQQEI SGMSSTMSFD ADGQSHHNML 180 ESQLENNIYS CLEQQDIVGE LPMDFRFEGG VEEIINAGEG SSGQWDWDDL LLDMDLYKDF 240 ATN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-22 | 5 | 107 | 9 | 110 | B-MYB |
1gv2_A | 4e-22 | 5 | 105 | 6 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-21 | 1 | 113 | 4 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-21 | 1 | 113 | 4 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-22 | 5 | 105 | 6 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-22 | 5 | 105 | 6 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00213 | DAP | Transfer from AT1G66370 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.EGQ9J |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016196641.1 | 0.0 | transcription factor MYB113-like | ||||
Refseq | XP_025648623.1 | 0.0 | transcription factor MYB113 | ||||
TrEMBL | A0A444ZNZ2 | 1e-180 | A0A444ZNZ2_ARAHY; Uncharacterized protein | ||||
STRING | XP_007140451.1 | 1e-120 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 5e-59 | myb domain protein 113 |