PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.EFA16
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 499aa    MW: 56476.9 Da    PI: 8.4683
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.EFA16genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.68.6e-1848134191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+ +++++   +ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.EFA16  48 KFYRNYAKAAGFSTRVWSTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 134
                  6***************998777..8889*************998877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-1548134IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.223304340IPR007527Zinc finger, SWIM-type
PfamPF044341.9E-4314337IPR007527Zinc finger, SWIM-type
SMARTSM005750.003315342IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MDDSTSDCQL NQGEVDYEFE SNEPLSVVDD QFVPKVGMTF TTLEDAEKFY RNYAKAAGFS  60
TRVWSTNRKG NEIKNQLITC SREGKWKSKI SPTEKTNPTA GLNCPARIYI HTLKDVGAWI  120
ISKVVLDHSH PCCPSKAEML KQHRELSMSI RRTIENNEEA GIRPSKTYQS FIAAAGVYLD  180
HHFWAGMRST QMSESMHSSF NKFISRNSSL IQFVKQYDNC LGSREQAERE SDAANFHTVI  240
LCATKSSIEA QFQDVYTHQK FREVQAQFRG KANCITRLTN SALGYSVYEV GEQVSSSIFF  300
INKFMVTYDS VAAEVKCQCL LFESRGILCR HALSVLSFER ATHTHIKSSH DEPLLEPRSK  360
RFDQLVFCSQ NICEFASESE ELTAILHRAY DNVMVEMESL KAKKKGTSSL SHEDANFESV  420
NELQIPLKIR TRGRPKNRLG LKLGKQIANA TRKKKTKALN ELNLFDAVSV VHSNSSQYQA  480
RVMNYQFRVP AAADNPLGA
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.EFA16
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A444ZDY10.0A0A444ZDY1_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.24e-20far-red elongated hypocotyls 3