PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.EF3DD | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | SRS | ||||||||
Protein Properties | Length: 347aa MW: 37089.6 Da PI: 7.3523 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 224.2 | 2.6e-69 | 132 | 280 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkel 100 g+++CqdCGnqakkdCah RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa+++++ + +a+ +skr+r+++ + + + +++ + ++ l Araip.EF3DD 132 GGGVNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQQLH-SADTSSKRHRDTHPALDTLPCAPPVPTIT-TTGL 227 5789****************************************************9887765.56778899999988888888888888876.5599 PP DUF702 101 etsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 e ++P+evss+avfrcv+vs++d +e++aYqtav+igGhvfkGiLydqG++ Araip.EF3DD 228 ELGQFPSEVSSSAVFRCVKVSAIDSVDEQYAYQTAVNIGGHVFKGILYDQGPQ 280 9**************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 7.0E-65 | 134 | 280 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.0E-26 | 136 | 178 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 5.5E-27 | 231 | 279 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048467 | Biological Process | gynoecium development |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MAGFFSLGGR GAGPHSNKEE EGERVAEKHH QDHHNSNSLF LFRNNEEVYN KGGFEIWPQP 60 YHQNQGFSNY YSFGVGPSTH QHRRNNNNND NSNNNSNDEG VSFCVSDEST RFGLTMMRSS 120 GGGGGTGSGG GGGGVNCQDC GNQAKKDCAH LRCRTCCKSR GFQCQTHVKS TWVPAAKRRE 180 RQQQLAALQQ QQLHSADTSS KRHRDTHPAL DTLPCAPPVP TITTTGLELG QFPSEVSSSA 240 VFRCVKVSAI DSVDEQYAYQ TAVNIGGHVF KGILYDQGPQ GLYTTAIVAE GSSAGGGGGG 300 GAEPQQQLSL ITAATTTAGN PFDPSSLYPA PLNAFMAGTQ FFPPPKS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.EF3DD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020961785.1 | 0.0 | protein SHI RELATED SEQUENCE 1-like | ||||
Refseq | XP_020961786.1 | 0.0 | protein SHI RELATED SEQUENCE 1-like | ||||
Refseq | XP_020961787.1 | 0.0 | protein SHI RELATED SEQUENCE 1-like | ||||
Refseq | XP_020961788.1 | 0.0 | protein SHI RELATED SEQUENCE 1-like | ||||
Refseq | XP_025665450.1 | 0.0 | protein SHI RELATED SEQUENCE 1 | ||||
Refseq | XP_025665452.1 | 0.0 | protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A0A445CCH5 | 0.0 | A0A445CCH5_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA06G03030.1 | 1e-113 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF882 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 3e-77 | SHI-related sequence 5 |