PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.EF3DD
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family SRS
Protein Properties Length: 347aa    MW: 37089.6 Da    PI: 7.3523
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.EF3DDgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702224.22.6e-691322803153
       DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkel 100
                   g+++CqdCGnqakkdCah RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa+++++ + +a+ +skr+r+++ +  +   +  +++ + ++ l
  Araip.EF3DD 132 GGGVNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQQLH-SADTSSKRHRDTHPALDTLPCAPPVPTIT-TTGL 227
                  5789****************************************************9887765.56778899999988888888888888876.5599 PP

       DUF702 101 etsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                  e  ++P+evss+avfrcv+vs++d  +e++aYqtav+igGhvfkGiLydqG++
  Araip.EF3DD 228 ELGQFPSEVSSSAVFRCVKVSAIDSVDEQYAYQTAVNIGGHVFKGILYDQGPQ 280
                  9**************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051427.0E-65134280IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.0E-26136178IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016245.5E-27231279IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MAGFFSLGGR GAGPHSNKEE EGERVAEKHH QDHHNSNSLF LFRNNEEVYN KGGFEIWPQP  60
YHQNQGFSNY YSFGVGPSTH QHRRNNNNND NSNNNSNDEG VSFCVSDEST RFGLTMMRSS  120
GGGGGTGSGG GGGGVNCQDC GNQAKKDCAH LRCRTCCKSR GFQCQTHVKS TWVPAAKRRE  180
RQQQLAALQQ QQLHSADTSS KRHRDTHPAL DTLPCAPPVP TITTTGLELG QFPSEVSSSA  240
VFRCVKVSAI DSVDEQYAYQ TAVNIGGHVF KGILYDQGPQ GLYTTAIVAE GSSAGGGGGG  300
GAEPQQQLSL ITAATTTAGN PFDPSSLYPA PLNAFMAGTQ FFPPPKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.EF3DD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020961785.10.0protein SHI RELATED SEQUENCE 1-like
RefseqXP_020961786.10.0protein SHI RELATED SEQUENCE 1-like
RefseqXP_020961787.10.0protein SHI RELATED SEQUENCE 1-like
RefseqXP_020961788.10.0protein SHI RELATED SEQUENCE 1-like
RefseqXP_025665450.10.0protein SHI RELATED SEQUENCE 1
RefseqXP_025665452.10.0protein SHI RELATED SEQUENCE 1
TrEMBLA0A445CCH50.0A0A445CCH5_ARAHY; Uncharacterized protein
STRINGGLYMA06G03030.11e-113(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.13e-77SHI-related sequence 5