PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.EEF42 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | Trihelix | ||||||||
Protein Properties | Length: 660aa MW: 76264.4 Da PI: 6.6379 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 39.2 | 1.8e-12 | 163 | 228 | 2 | 70 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W+++ev aL+++r+ m+++ + + W++vs+k+ e gf++s +Ckek+e+ +++ + +++++ Araip.EEF42 163 WSNDEVVALLRIRSTMDTTWFPQ---LTYWDHVSRKLGELGFKKSGDKCKEKFEDETRYFNNYAKNNSY 228 *****************998776...89********************************999988865 PP | |||||||
2 | trihelix | 89.9 | 2.9e-28 | 512 | 603 | 1 | 86 |
trihelix 1 rWtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++evlaLi++r + eer + ++ k plWe++s+ m++ g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql+ Araip.EEF42 512 RWPRDEVLALINLRCesikmnnNAEERESGNNNKIPLWERISQGMSDLGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SIDSRTCPYFHQLK 603 8*************977744333333333357999******************************************8.78889*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.017 | 155 | 216 | IPR017877 | Myb-like domain |
SMART | SM00717 | 10 | 159 | 218 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 2.3E-8 | 162 | 226 | No hit | No description |
PROSITE profile | PS50090 | 6.365 | 505 | 576 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.2 | 509 | 578 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 2.5E-19 | 511 | 605 | No hit | No description |
CDD | cd12203 | 4.86E-24 | 511 | 583 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001158 | Molecular Function | enhancer sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 660 aa Download sequence Send to blast |
LVACLACSIN LLIYSERRKK ERKKERKKKD RTREVNKFRD NTQNMFDGLP SSSEHFHQFI 60 TPRTTTSTTL PLPHHHHHHH HLSPSSSSSS SSFSPLLHHH ASLTPINTNT FLPFDPYNPH 120 HHQQQPNPTF SSVLNNNNLF HTSATDERVQ TQVLPNDLID SSWSNDEVVA LLRIRSTMDT 180 TWFPQLTYWD HVSRKLGELG FKKSGDKCKE KFEDETRYFN NYAKNNSYRF LNELEEFYQG 240 DNHNENPMVD NQDHVVTEKT QEFEHPINAG GGDIEEVEEE EEEEEEEEES SRDGKSVKEQ 300 CEEDNDSEKK MKMKRKRKRR CRFEMLKGFC ESIVNNMMAQ QEEIHNKLIQ DMLRRDEEKL 360 QREEAWKKQE TERMNKELQI MAQEQAIAGD RQASIIEFLK KYAATQTLTT NPNNDEPTPS 420 SSKLIIPSSH QIQNSSGLCS IPPLSAENPS SMSDTLLQQV HSSSTHSSPA SHNNTTSSSS 480 LNRHDNYHSN SISTMLVKPL VTDQKENNVG RRWPRDEVLA LINLRCESIK MNNNAEERES 540 GNNNKIPLWE RISQGMSDLG YKRSAKRCKE KWENINKYFR KTKDVNKKRS IDSRTCPYFH 600 QLKSLYDEGK LVHQPETTTP ENHSGQLLPP IESSDHVGSG GGFSDDHEKT LIQEPPLNFG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 24 | RRKKERKKE |
2 | 18 | 26 | KKERKKERK |
3 | 308 | 318 | KKMKMKRKRKR |
4 | 313 | 319 | KRKRKRR |
5 | 314 | 319 | RKRKRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00011 | PBM | Transfer from AT5G28300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.EEF42 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 3e-54 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016205443.1 | 0.0 | trihelix transcription factor GTL2 | ||||
Refseq | XP_025662654.1 | 0.0 | trihelix transcription factor GTL2 | ||||
TrEMBL | A0A444YKE8 | 0.0 | A0A444YKE8_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA19G43280.1 | 1e-159 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5043 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28300.1 | 4e-84 | Trihelix family protein |