PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.EDM7N | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | TCP | ||||||||
Protein Properties | Length: 256aa MW: 29056.8 Da PI: 9.9197 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 92.5 | 8.5e-29 | 56 | 170 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................................s 66 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl + k i++l+ + s Araip.EDM7N 56 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLSQPSKVIDWLLDATKLDIDKLPPLhfpqpcfqppqtlfphllhdpssfwkprfweldsS 153 79*************************************************************88888777777777777655543333333333221 PP TCP 67 sssaseceaesssssasnsssg.........k 89 as+sss+ Araip.EDM7N 154 ---------------ASSSSSSrflkgkdlmT 170 ...............22222222222211210 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.8E-26 | 57 | 170 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.442 | 57 | 115 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MMMETKEEGM IIEENKKKSN ENDKFTLKGS AAASSSTRQW SAFRNPRIVR VSRSFGGKDR 60 HSKVCTIRGL RDRRIRLSVP TAIQLYDLQD KLGLSQPSKV IDWLLDATKL DIDKLPPLHF 120 PQPCFQPPQT LFPHLLHDPS SFWKPRFWEL DSSASSSSSS RFLKGKDLMT TMPSDNNNNK 180 AKWIFKSNNA DHENQEFGGG YTTQRLFPME TQTTTNNNPF QMGDYYGSYP MMNNGGLMQL 240 NHLSSLQVGP SGSSQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-18 | 62 | 116 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-18 | 62 | 116 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00008 | PBM | Transfer from 496250 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.EDM7N |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020970331.1 | 1e-176 | transcription factor TCP5-like, partial | ||||
Swissprot | Q9FME3 | 1e-49 | TCP5_ARATH; Transcription factor TCP5 | ||||
TrEMBL | A0A444X7J2 | 1e-173 | A0A444X7J2_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA04G32324.1 | 2e-66 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 6e-50 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Publications ? help Back to Top | |||
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