PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.EDF1T | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 498aa MW: 54691.1 Da PI: 7.3483 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 135.8 | 1.3e-42 | 126 | 201 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls+ k+yh+rhkvCevhsk++vv+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q Araip.EDF1T 126 CQVYGCNKDLSSSKDYHKRHKVCEVHSKTAVVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQ 201 **************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 7.0E-34 | 120 | 187 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.547 | 123 | 200 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.96E-39 | 124 | 203 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.5E-32 | 126 | 199 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 498 aa Download sequence Send to blast |
MESSWDYVTE EEKGYVSNDA LSAAPPPPPS TLLRSKSSFL GWELKTPCSS FDNQCFEELG 60 FPELLGKPFS GRDSLIDLKL GRFADHADVN VASFSKGAPV LCSSVSSTAP KRPRGSLGLH 120 SQTAYCQVYG CNKDLSSSKD YHKRHKVCEV HSKTAVVIVN GIEQRFCQQC SRFHLLAEFD 180 DGKRSCRKRL AGHNERRRKP QAGIHSGKAA RLPHPCGSVL VVLVDSRFQG TMLSSASFIS 240 SDSDKYGMSS FWKPGKAEHG SDFWHPQSRS LFPSYNGKQF PFLHESGATP TTTESILYEN 300 NNQYKHVIAA QHPGSRPLFQ NSSLGSDDFN LFDTSSTVQG LSGISDSCCA LSLLSSQSQN 360 SSSQSSGIPF VPPMVSPSSH SHPCSISQVS EKIGMSSQTS SCRVYDRFPS TLNPASGSQL 420 SPILISDNNN IVNLEMADRI FQGSDFVNAR DRLSCEDVAT IDLLQLSSQL QRVEHQRQSL 480 QEFNSTDTFA VNLILIWC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-29 | 115 | 199 | 4 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.EDF1T |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016193761.1 | 0.0 | squamosa promoter-binding-like protein 6 isoform X1 | ||||
TrEMBL | A0A445AZ73 | 0.0 | A0A445AZ73_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA0005S50.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69170.1 | 5e-47 | SBP family protein |