PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.EAZ0R
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 180aa    MW: 21281.9 Da    PI: 10.5472
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.EAZ0RgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.83.9e-30959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k ien +nrqvt+skRrngi+KKA+ELSvLCda+v++i+fs+++k++ey+s
  Araip.EAZ0R  9 KLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYIS 59
                 569**********************************************86 PP
2K-box66.68.8e-2376170696
        K-box   6 gks.leeakaeslqqelakLkkeienLqreqRhllGe...dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                  g   l+++++e++ ++l+kLk+ +++L+r++R+++Ge   d++++s+++L+ Le+++ +++ kiR++K +++++ +e+ +kk ++l++ n +L  
  Araip.EAZ0R  76 GDIdLWHSHYEKMLENLKKLKDINNKLRRQIRNRIGEgslDMDDMSFQQLRTLEEDMVSAIAKIRERKFHVIRTRTETCRKKVRSLEQMNGNLLL 170
                  43359********************************77779************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.497161IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-35296IPR002100Transcription factor, MADS-box
CDDcd002657.80E-38277No hitNo description
PRINTSPR004041.5E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.2E-251157IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-1782169IPR002487Transcription factor, K-box
PROSITE profilePS5129713.12785179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MGRGKIEIKL IENPTNRQVT YSKRRNGIFK KAHELSVLCD AKVSLIMFSK NNKMHEYISP  60
GLSTKKIIDQ YQKTLGDIDL WHSHYEKMLE NLKKLKDINN KLRRQIRNRI GEGSLDMDDM  120
SFQQLRTLEE DMVSAIAKIR ERKFHVIRTR TETCRKKVRS LEQMNGNLLL ELVRSLVYLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-16162162MEF2 CHIMERA
6byy_B7e-16162162MEF2 CHIMERA
6byy_C7e-16162162MEF2 CHIMERA
6byy_D7e-16162162MEF2 CHIMERA
6bz1_A7e-16162162MEF2 CHIMERA
6bz1_B7e-16162162MEF2 CHIMERA
6bz1_C7e-16162162MEF2 CHIMERA
6bz1_D7e-16162162MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.EAZ0R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015964203.11e-124floral homeotic protein PMADS 1 isoform X3
RefseqXP_016200659.11e-124floral homeotic protein PMADS 1 isoform X2
RefseqXP_020978705.11e-124floral homeotic protein DEFICIENS isoform X3
RefseqXP_020997846.11e-124floral homeotic protein DEFICIENS isoform X4
RefseqXP_025653544.11e-124floral homeotic protein PMADS 1 isoform X2
RefseqXP_025698951.11e-124floral homeotic protein PMADS 1 isoform X2
RefseqXP_029148993.11e-124floral homeotic protein DEFICIENS isoform X3
SwissprotQ003J24e-82TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A444Z9C51e-122A0A444Z9C5_ARAHY; Uncharacterized protein
STRINGGLYMA01G37470.11e-115(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.18e-56MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]