PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.E8531

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

HD-ZIP

Protein Properties

Length: 308aa MW: 34145.2 Da PI: 7.6812

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.E8531	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.7	4e-18	143	197	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k Araip.E8531 143 RKKLRLTKEQSMLLEETFKQHNTLNPKQKQTLAKELNLRARQVEVWFQNRRARTK 197 788899***********************************************98 PP
2	HD-ZIP_I/II	120.1	1.2e-38	143	232	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq+ lLEe+F+++++L+p++K++la+eL+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr +++l+een+rL+kev+eLr +l Araip.E8531 143 RKKLRLTKEQSMLLEETFKQHNTLNPKQKQTLAKELNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRYCENLSEENRRLQKEVQELR-TL 232 69*************************************************************************************9.44 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	4.6E-15	8	112	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	8.0E-19	128	197	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.5E-18	131	200	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.491	139	199	IPR001356	Homeobox domain
SMART	SM00389	1.0E-14	141	203	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-15	143	197	IPR001356	Homeobox domain
CDD	cd00086	4.50E-15	143	200	No hit	No description
PROSITE pattern	PS00027	0	174	197	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.1E-9	199	232	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	2.1E-24	199	242	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MGEKDIGNED VGLSLSLSLG RGCSSSPPPL KPQRSVPMNN INEKSSWNEL FQLLPQVDRS 60 TDMRPLFGGG INMNSMPSMA ETPPDCNQDN HDSSPNNSSL SSGSGCKRSE REEDNGTAVA 120 GIELVSCSRG SDDEDGGGGE AARKKLRLTK EQSMLLEETF KQHNTLNPKQ KQTLAKELNL 180 RARQVEVWFQ NRRARTKLKQ TEVDCEYLKR YCENLSEENR RLQKEVQELR TLKLSPQLYM 240 HMNPPTTLTM CPSCERVAVS SASSSNSAAA STTHVPALQS NCNNSLGPHI QRPVRVNTWP 300 FDSPISRP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	191	199	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269\|PubMed:12492842}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.E8531

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269\|PubMed:12492842}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016196781.1	0.0	homeobox-leucine zipper protein HAT2 isoform X2
Swissprot	P46601	2e-82	HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBL	A0A444ZQD6	0.0	A0A444ZQD6_ARAHY; Uncharacterized protein
STRING	GLYMA18G48880.1	4e-98	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1239	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	7e-70	homeobox protein 2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697]