PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.E4Y09 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 523aa MW: 59830.9 Da PI: 9.4184 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 56 | 1.3e-17 | 61 | 147 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r++ ++++ +ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+++p Araip.E4Y09 61 KFYRNYAKATGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 147 6***************998776..8889*************998877...8999**************998879***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.0E-15 | 61 | 147 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 9.198 | 310 | 346 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.1E-4 | 319 | 343 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 8.0E-4 | 321 | 348 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 523 aa Download sequence Send to blast |
MDHSTSDCQL NPGKVDYEFE TNEVPEPVYL QFMALKPLSV VDDELVPKVR MTFTTLEDAG 60 KFYRNYAKAT GFSTRVRCTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR 120 IYIHTLKDVG AWIISKVVLD HSHPCCPSKA EMLKQHRKLS MSIRRTIENN EEADLYEDRH 180 IWVPIYLDHH FWAGMRSTQR SESMHSFFNK YITRNSSLIQ FVKQYDNCLG SREQAERESD 240 AADFHTVIPC ATKSSIEAQF QDAYTHAKFR KVQAQFRRKA NCITRLKNSA LGYSIYEVGE 300 QVSSSIFNKF AVTYDSVAAE VKCQCLLFES RGILCRHALS VLSFEQVSQV SPRYILERWS 360 KKVKRRHTHI KSSHDEPLME PRSKRFDQLV FRSQNICEFA SESEELTAIL HRAYDNVMAE 420 MEALKAKRKG TSSLSHENAN LESVNELQSS PRIRTRGRPE NRLGSKLEKQ IANATKKKKT 480 KVLSEINLFD AASAAHSNSS QYQGHVMNYQ FRVPAAGDNS LGV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.E4Y09 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ637178 | 0.0 | HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020997233.1 | 0.0 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A445A850 | 0.0 | A0A445A850_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21 | 14 | 477 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 6e-35 | far-red elongated hypocotyls 3 |