PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.E4G9U
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CO-like
Protein Properties Length: 363aa    MW: 39479.3 Da    PI: 6.9885
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.E4G9UgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.41e-061554437
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                 + C+ ++   + lfC+ ++ +lC  C +++H        H
  Araip.E4G9U 15 KPCDSCKIASAALFCRPDSAFLCIACDSKIHCAnklasrH 54
                 68******99********************9554555556 PP
2zf-B_box27.28e-0956102242
     zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                  + ++C+ +e+ ++   C+ +   lC +C + +H+       H+++p+
  Araip.E4G9U  56 RVWMCEVCEQAPAAVTCKADAAALCVTCDSDIHSAnplarrHERIPV 102
                  5789*****************************66889999999885 PP
3CCT69.87.2e-24288331144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Araip.E4G9U 288 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 331
                  9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.3E-91259IPR000315B-box-type zinc finger
PROSITE profilePS501199.9261259IPR000315B-box-type zinc finger
CDDcd000213.97E-61659No hitNo description
PROSITE profilePS5011910.75155102IPR000315B-box-type zinc finger
PfamPF006436.8E-757102IPR000315B-box-type zinc finger
CDDcd000213.01E-758102No hitNo description
SMARTSM003364.5E-1060102IPR000315B-box-type zinc finger
PROSITE profilePS5101716.787288330IPR010402CCT domain
PfamPF062035.5E-18288330IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGLKGLRSGW TVPPKPCDSC KIASAALFCR PDSAFLCIAC DSKIHCANKL ASRHDRVWMC  60
EVCEQAPAAV TCKADAAALC VTCDSDIHSA NPLARRHERI PVEPFFDSAD SIVKASAASF  120
SFVVPTDNGI SSDGFPNDDA AWLIPNPNYG SKLMDAPDMK SREMFFSEMD PFLDFDYSNS  180
FQNNNNNNSA GNDSVVPVQS KPAPMMNHHA EGSCFDIDFC RSKLSSFNYP SQSISQSVSS  240
SSLDVGVVPD GNTVSDISYS FGRNCSDSSG MGSAGSGGGA TQLCGMDREA RVLRYREKRK  300
NRKFEKTIRY ASRKAYAETR PRIKGRFAKR TEIESEVDRL YSPGGGVPGC LMLDSQYGVV  360
PSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.E4G9U
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU3233190.0GU323319.1 Arachis hypogaea cultivar Huayu19 CCT domain protein (CCT) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016200841.10.0zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH81e-120COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A445AV410.0A0A445AV41_ARAHY; Uncharacterized protein
STRINGXP_007154800.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-109CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]