PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.DZ38J
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 160aa    MW: 18764.7 Da    PI: 10.5571
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.DZ38JgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.72.3e-26959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien++ rqvtfskRrng+lKK +ELSvLCda++ +i fs+tgkl+ yss
  Araip.DZ38J  9 KRIENTTTRQVTFSKRRNGLLKKTNELSVLCDAQIGLIAFSNTGKLFHYSS 59
                 79***********************************************96 PP
2K-box37.21.3e-13731311270
        K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 
                  +++e l  e+a L+ ++ +L+  + ++lGe++  L+++eL +Le +L++s+ ++R++K 
  Araip.DZ38J  73 HDQEDLLIEMAMLRHQNLSLEMGIQRYLGEGIAFLQYEELTKLEGELQSSVARVRKRKR 131
                  556778889************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.871161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-37160IPR002100Transcription factor, MADS-box
CDDcd002656.68E-35274No hitNo description
SuperFamilySSF554553.14E-28374IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-28323IPR002100Transcription factor, MADS-box
PfamPF003198.4E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-283859IPR002100Transcription factor, MADS-box
PfamPF014867.2E-1172131IPR002487Transcription factor, K-box
PROSITE profilePS512977.97575160IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MRRGKIEIKR IENTTTRQVT FSKRRNGLLK KTNELSVLCD AQIGLIAFSN TGKLFHYSSH  60
PYRTHIMRHG HAHDQEDLLI EMAMLRHQNL SLEMGIQRYL GEGIAFLQYE ELTKLEGELQ  120
SSVARVRKRK RFYAHRICLV KSDIFRARFN GGYRIGLEYP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-16159159MEF2C
5f28_B5e-16159159MEF2C
5f28_C5e-16159159MEF2C
5f28_D5e-16159159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.DZ38J
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016176334.23e-90MADS-box protein FBP24
RefseqXP_016176336.23e-90MADS-box protein FBP24
RefseqXP_016176337.23e-90MADS-box protein FBP24
RefseqXP_016176338.23e-90MADS-box protein FBP24
RefseqXP_020966009.13e-90MADS-box protein FBP24
RefseqXP_025675217.13e-90MADS-box protein FBP24
RefseqXP_029151339.13e-90MADS-box protein FBP24
RefseqXP_029151340.13e-90MADS-box protein FBP24
RefseqXP_029151341.13e-90MADS-box protein FBP24
RefseqXP_029151342.13e-90MADS-box protein FBP24
RefseqXP_029151343.13e-90MADS-box protein FBP24
RefseqXP_029151344.13e-90MADS-box protein FBP24
RefseqXP_029151345.13e-90MADS-box protein FBP24
SwissprotQ9ATE53e-39FBP24_PETHY; MADS-box protein FBP24
TrEMBLA0A444XM702e-88A0A444XM70_ARAHY; Uncharacterized protein
STRINGGLYMA20G00401.11e-48(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49352952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.31e-35MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]