PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.DYV42

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bHLH

Protein Properties

Length: 474aa MW: 52694.2 Da PI: 6.8426

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.DYV42	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.6	9.1e-08	386	426	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR++i +++ L++++P K++ a++L +A +Y+k L Araip.DYV42 386 ARQRREKISERIRVLQKIVPGG-----SKMDTASMLDEAANYLKFL 426 69****************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.939	377	426	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.60E-10	383	431	No hit	No description
SuperFamily	SSF47459	6.94E-14	383	444	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-12	383	432	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-12	385	440	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.3E-5	386	426	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MDGLSWDLSS QLAANNLAML EGEEDYSIFV NNHMQEMHKS HHRHGYPNSE KVMMMMMSNM 60 VQYPSSATPE AEIVSFPQRT RNNNNNFSMA VKSSSSSSTG WDVKEALTSN HQSWPSLSVV 120 NYVPDFNMAH HHQQQQQQQL INSTTQSSSS LESLDCLLSA TNSNTDTTTA TTSLEEDDGI 180 SIILSDCRNF WNFTTNYGAI TAAAAAASSA ESETNNASNK QNNMQYHHHH QINNNELDET 240 VSQASKRTII NDQYDLIKTS SAAAATTTTG PYFSIFHNSS SSATESGAFK LIKENPLPRS 300 KKPRWENNNN NNNNNKRGGS SSNINFQQPN SSHSSIDEPD PEAIAQMKEM IYRAAAFRPV 360 NLGLEVAEKP KRKNVKISSD PQTVAARQRR EKISERIRVL QKIVPGGSKM DTASMLDEAA 420 NYLKFLRSQV KALESLGNKL DTMNNHNNVP PTTIAFSFNP SFPIMPSYFP NPKP

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MDGLSWDLSS QLAANNLAML EGEEDYSIFV NNHMQEMHKS HHRHGYPNSE KVMMMMMSNM  60
VQYPSSATPE AEIVSFPQRT RNNNNNFSMA VKSSSSSSTG WDVKEALTSN HQSWPSLSVV  120
NYVPDFNMAH HHQQQQQQQL INSTTQSSSS LESLDCLLSA TNSNTDTTTA TTSLEEDDGI  180
SIILSDCRNF WNFTTNYGAI TAAAAAASSA ESETNNASNK QNNMQYHHHH QINNNELDET  240
VSQASKRTII NDQYDLIKTS SAAAATTTTG PYFSIFHNSS SSATESGAFK LIKENPLPRS  300
KKPRWENNNN NNNNNKRGGS SSNINFQQPN SSHSSIDEPD PEAIAQMKEM IYRAAAFRPV  360
NLGLEVAEKP KRKNVKISSD PQTVAARQRR EKISERIRVL QKIVPGGSKM DTASMLDEAA  420
NYLKFLRSQV KALESLGNKL DTMNNHNNVP PTTIAFSFNP SFPIMPSYFP NPKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.DYV42

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016170037.1	0.0	transcription factor bHLH87
Refseq	XP_025671392.1	0.0	transcription factor bHLH87
TrEMBL	A0A444Y940	0.0	A0A444Y940_ARAHY; Uncharacterized protein
STRING	GLYMA07G01611.1	1e-131	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4530	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	4e-70	bHLH family protein